Strain Fitness in Shewanella amazonensis SB2B around Sama_1608

Experiment: Cisplatin 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.005 mg/ml
1,964,491	+				+0.4
1,964,491	+				+0.9
1,964,491	+				+0.5
1,964,491	+				+1.3
1,964,494	+				+0.7
1,964,494	+				+0.7
1,964,551	+				+0.7
1,964,561	+				+0.2
1,964,562	-				+2.2
1,964,585	-				-0.1
1,964,587	-				-0.1
1,964,596	+				+1.2
1,964,596	+				-1.2
1,964,596	+				-0.9
1,964,596	+				-1.3
1,964,596	+				+0.1
1,964,596	+				-0.6
1,964,596	+				-0.7
1,964,596	+				-0.1
1,964,596	+				+0.9
1,964,596	+				-0.3
1,964,596	+				-1.3
1,964,596	+				+0.5
1,964,597	-				+0.8
1,964,597	-				+0.4
1,964,600	+				+0.0
1,964,600	+				+0.7
1,964,600	+				+0.7
1,964,600	+				-0.8
1,964,600	+				+0.4
1,964,601	-				-0.7
1,964,601	-				-0.3
1,964,646	-				-0.7
1,964,655	+				+0.9
1,964,655	+				-2.3
1,964,655	+				+0.2
1,964,707	+				-2.1
1,964,707	+				-0.7
1,964,708	-				-0.9
1,964,708	-				-2.3
1,964,709	+				+0.1
1,964,756	+				-1.9
1,964,756	+				-0.1
1,964,757	-				-1.3
1,964,757	-				-1.7
1,964,757	-				-0.3
1,964,757	-				-2.5
1,964,760	+				-1.6
1,964,760	+				-0.6
1,964,761	-				-1.7
1,964,772	+				-0.7
1,964,800	+				+0.9
1,964,800	+				+0.2
1,964,800	+				-1.1
1,964,800	+				-0.3
1,964,800	+				-1.3
1,964,802	+				+0.4
1,964,957	+		Sama_1607	0.26	-1.9
1,964,957	+		Sama_1607	0.26	-2.3
1,964,957	+		Sama_1607	0.26	+1.2
1,964,957	+		Sama_1607	0.26	-1.8
1,964,990	+		Sama_1607	0.31	+0.1
1,965,023	+		Sama_1607	0.36	-0.1
1,965,023	+		Sama_1607	0.36	-0.7
1,965,023	+		Sama_1607	0.36	+0.1
1,965,023	+		Sama_1607	0.36	-0.6
1,965,023	+		Sama_1607	0.36	-0.7
1,965,023	+		Sama_1607	0.36	-0.2
1,965,024	-		Sama_1607	0.36	-1.1
1,965,024	-		Sama_1607	0.36	-1.7
1,965,024	-		Sama_1607	0.36	-0.9
1,965,090	+		Sama_1607	0.47	-2.4
1,965,159	+		Sama_1607	0.57	-0.4
1,965,235	+		Sama_1607	0.69	-0.7
1,965,336	+		Sama_1607	0.85	-0.7
1,965,336	+		Sama_1607	0.85	-1.3
1,965,336	+		Sama_1607	0.85	+0.5
1,965,336	+		Sama_1607	0.85	+0.4
1,965,349	+		Sama_1607	0.87	-0.6
1,965,349	+		Sama_1607	0.87	-0.5
1,965,350	-		Sama_1607	0.87	-2.2
1,965,361	+		Sama_1607	0.89	-2.3
1,965,362	-		Sama_1607	0.89	-0.3
1,965,362	-		Sama_1607	0.89	-2.1
1,965,407	+				-1.6
1,965,407	+				-0.8
1,965,407	+				-0.7
1,965,407	+				+1.2
1,965,407	+				-1.8
1,965,408	-				-1.5
1,965,413	+				-3.4
1,965,413	+				-0.1
1,965,413	+				-0.3
1,965,414	-				-0.3
1,965,414	-				-1.9
1,965,449	-				-0.9
1,965,497	+				-0.7
1,965,497	+				-1.5
1,965,497	+				-0.3
1,965,517	+				-1.5
1,965,517	+				-4.2
1,965,521	+				-0.9
1,965,521	+				-1.5
1,965,521	+				-2.7
1,965,521	+				-2.1
1,965,522	-				-0.3
1,965,522	-				-2.8
1,965,525	+				-2.5
1,965,586	+				-3.2
1,965,661	-	uvrC	Sama_1608	0.12	-2.8
1,965,661	-	uvrC	Sama_1608	0.12	-1.6
1,965,678	-	uvrC	Sama_1608	0.13	-0.9
1,965,689	+	uvrC	Sama_1608	0.14	-2.1
1,965,689	+	uvrC	Sama_1608	0.14	-2.5
1,965,701	+	uvrC	Sama_1608	0.14	-2.8
1,965,701	+	uvrC	Sama_1608	0.14	-3.3
1,965,701	+	uvrC	Sama_1608	0.14	-0.3
1,965,701	+	uvrC	Sama_1608	0.14	-1.3
1,965,702	-	uvrC	Sama_1608	0.15	-2.3
1,965,724	+	uvrC	Sama_1608	0.16	-1.9
1,965,724	+	uvrC	Sama_1608	0.16	-1.9
1,965,724	+	uvrC	Sama_1608	0.16	-2.3
1,965,725	-	uvrC	Sama_1608	0.16	-2.8
1,965,739	+	uvrC	Sama_1608	0.17	-1.5
1,965,740	-	uvrC	Sama_1608	0.17	-2.9
1,965,758	-	uvrC	Sama_1608	0.18	-0.7
1,965,810	-	uvrC	Sama_1608	0.20	-1.3
1,965,899	+	uvrC	Sama_1608	0.25	-1.7
1,965,902	+	uvrC	Sama_1608	0.26	-2.3
1,965,986	+	uvrC	Sama_1608	0.30	-3.6
1,965,986	+	uvrC	Sama_1608	0.30	-1.3
1,965,986	+	uvrC	Sama_1608	0.30	-2.7
1,965,986	+	uvrC	Sama_1608	0.30	-1.9
1,966,092	-	uvrC	Sama_1608	0.36	-0.3
1,966,199	+	uvrC	Sama_1608	0.42	-3.0
1,966,269	-	uvrC	Sama_1608	0.46	-1.7
1,966,311	+	uvrC	Sama_1608	0.48	-3.8
1,966,311	+	uvrC	Sama_1608	0.48	-2.7
1,966,311	+	uvrC	Sama_1608	0.48	-0.9
1,966,334	+	uvrC	Sama_1608	0.49	-2.1
1,966,378	-	uvrC	Sama_1608	0.52	-1.5
1,966,488	+	uvrC	Sama_1608	0.58	-2.9
1,966,501	+	uvrC	Sama_1608	0.58	-2.9
1,966,540	+	uvrC	Sama_1608	0.61	-3.2
1,966,562	-	uvrC	Sama_1608	0.62	-2.4
1,966,603	-	uvrC	Sama_1608	0.64	-2.8
1,966,603	-	uvrC	Sama_1608	0.64	-3.3
1,966,625	-	uvrC	Sama_1608	0.65	-2.5
1,966,700	+	uvrC	Sama_1608	0.69	-0.3
1,966,714	+	uvrC	Sama_1608	0.70	-3.9
1,966,714	+	uvrC	Sama_1608	0.70	-2.3
1,966,714	+	uvrC	Sama_1608	0.70	-3.7
1,966,714	+	uvrC	Sama_1608	0.70	-1.9
1,966,715	-	uvrC	Sama_1608	0.70	-1.7
1,966,715	-	uvrC	Sama_1608	0.70	-1.9
1,966,717	-	uvrC	Sama_1608	0.70	-2.3
1,966,726	+	uvrC	Sama_1608	0.71	-2.7
1,966,727	-	uvrC	Sama_1608	0.71	-0.9
1,966,727	-	uvrC	Sama_1608	0.71	-2.7
1,966,742	+	uvrC	Sama_1608	0.72	-3.0
1,966,781	-	uvrC	Sama_1608	0.74	-1.9
1,966,861	-	uvrC	Sama_1608	0.78	-3.6
1,967,020	+	uvrC	Sama_1608	0.87	-1.7
1,967,086	+				-2.5
1,967,087	-				-2.7
1,967,147	+				-2.0
1,967,880	+				-0.1
1,967,883	+				-0.3
1,967,883	+				-0.3
1,967,883	+				-0.6
1,967,883	+				+0.9
1,967,894	+				+0.4
1,968,021	+				-2.5
1,968,021	+				-1.2
1,968,021	+				+1.7
1,968,034	+				-2.1
1,968,068	+				-0.9
1,968,125	+		Sama_R0061	0.55	-1.9