Strain Fitness in Shewanella amazonensis SB2B around Sama_1312

Experiment: Cisplatin 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.005 mg/ml
1,594,896	-				+0.5
1,594,896	-				+0.4
1,594,896	-				-1.2
1,594,918	+				-0.1
1,594,919	-				+0.1
1,594,949	+				+2.4
1,594,950	-				-3.7
1,595,020	+				+0.0
1,595,026	+				-1.2
1,595,026	+				-0.2
1,595,026	+				-1.2
1,595,027	-				-2.0
1,595,181	+		Sama_1311	0.47	-0.2
1,595,221	+		Sama_1311	0.59	-1.2
1,595,481	-	recR	Sama_1312	0.18	-3.6
1,595,552	+	recR	Sama_1312	0.30	-3.3
1,595,644	+	recR	Sama_1312	0.46	-3.7
1,595,645	-	recR	Sama_1312	0.46	+0.8
1,595,683	-	recR	Sama_1312	0.52	-1.8
1,595,704	+	recR	Sama_1312	0.56	+0.8
1,595,704	+	recR	Sama_1312	0.56	-2.2
1,595,704	+	recR	Sama_1312	0.56	-1.6
1,595,704	+	recR	Sama_1312	0.56	-1.7
1,595,704	+	recR	Sama_1312	0.56	-2.0
1,595,705	-	recR	Sama_1312	0.56	-2.4
1,595,705	-	recR	Sama_1312	0.56	-2.5
1,595,705	-	recR	Sama_1312	0.56	-2.0
1,595,705	-	recR	Sama_1312	0.56	-2.2
1,595,705	-	recR	Sama_1312	0.56	-0.8
1,595,808	-	recR	Sama_1312	0.73	-1.2
1,595,835	+	recR	Sama_1312	0.78	-2.8
1,595,835	+	recR	Sama_1312	0.78	-3.7
1,595,835	+	recR	Sama_1312	0.78	-2.2
1,595,835	+	recR	Sama_1312	0.78	-1.2
1,595,835	+	recR	Sama_1312	0.78	-2.5
1,595,836	-	recR	Sama_1312	0.78	+0.2
1,595,836	-	recR	Sama_1312	0.78	-1.8
1,595,836	-	recR	Sama_1312	0.78	-4.0
1,595,836	-	recR	Sama_1312	0.78	-2.9
1,595,866	+	recR	Sama_1312	0.83	-3.9
1,595,967	+				+0.2
1,595,977	-				-0.2
1,596,100	+				-0.1
1,596,100	+				+0.8
1,596,100	+				+0.8
1,596,101	-				-0.2
1,596,101	-				-0.3
1,596,110	+				-1.1
1,596,110	+				-0.6
1,596,111	-				+1.4
1,596,111	-				+0.8
1,596,127	-				-0.3
1,596,149	-				-0.3
1,596,224	-				+0.4
1,596,293	-				+1.7
1,596,319	+				+0.6
1,596,319	+				-1.8
1,596,320	-				+1.1
1,596,320	-				-0.1
1,596,344	+		Sama_1313	0.10	+2.4
1,596,383	+		Sama_1313	0.12	+0.6
1,596,383	+		Sama_1313	0.12	-0.5
1,596,383	+		Sama_1313	0.12	+0.4
1,596,383	+		Sama_1313	0.12	+0.6
1,596,383	+		Sama_1313	0.12	+0.2
1,596,383	+		Sama_1313	0.12	+0.1
1,596,384	-		Sama_1313	0.12	-0.5
1,596,384	-		Sama_1313	0.12	+0.1
1,596,384	-		Sama_1313	0.12	+0.4
1,596,402	+		Sama_1313	0.13	+1.1
1,596,402	+		Sama_1313	0.13	-0.9
1,596,402	+		Sama_1313	0.13	-1.1
1,596,402	+		Sama_1313	0.13	-0.4
1,596,403	-		Sama_1313	0.13	-1.2
1,596,453	+		Sama_1313	0.16	-0.3
1,596,543	+		Sama_1313	0.20	-0.5
1,596,543	+		Sama_1313	0.20	-0.1
1,596,588	+		Sama_1313	0.23	+1.8
1,596,588	+		Sama_1313	0.23	-1.3
1,596,588	+		Sama_1313	0.23	+0.4
1,596,630	+		Sama_1313	0.25	-0.1
1,596,630	+		Sama_1313	0.25	-0.2
1,596,748	+		Sama_1313	0.31	+0.8
1,596,759	+		Sama_1313	0.32	+0.6
1,596,759	+		Sama_1313	0.32	+0.5
1,596,759	+		Sama_1313	0.32	-0.2
1,596,760	-		Sama_1313	0.32	+0.1
1,596,774	-		Sama_1313	0.33	+0.7
1,596,781	+		Sama_1313	0.33	-0.8
1,596,781	+		Sama_1313	0.33	+0.8
1,596,856	-		Sama_1313	0.37	+0.8
1,596,913	+		Sama_1313	0.40	+0.7
1,596,914	-		Sama_1313	0.40	-1.1
1,596,914	-		Sama_1313	0.40	-0.7
1,596,925	+		Sama_1313	0.40	+1.1
1,596,925	+		Sama_1313	0.40	+0.2