Strain Fitness in Shewanella amazonensis SB2B around Sama_0678

Experiment: Cisplatin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0677 and Sama_0678 are separated by 143 nucleotidesSama_0678 and Sama_0679 are separated by 374 nucleotides Sama_0677: Sama_0677 - U32 family peptidase (RefSeq), at 835,288 to 837,207 _0677 Sama_0678: Sama_0678 - hypothetical protein (RefSeq), at 837,351 to 837,728 _0678 Sama_0679: Sama_0679 - putative TonB-dependent receptor (RefSeq), at 838,103 to 841,132 _0679 Position (kb) 837 838Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 836.351 kb on + strand, within Sama_0677at 836.351 kb on + strand, within Sama_0677at 836.351 kb on + strand, within Sama_0677at 836.351 kb on + strand, within Sama_0677at 836.351 kb on + strand, within Sama_0677at 836.352 kb on - strand, within Sama_0677at 836.352 kb on - strand, within Sama_0677at 836.352 kb on - strand, within Sama_0677at 836.357 kb on + strand, within Sama_0677at 836.357 kb on + strand, within Sama_0677at 836.358 kb on - strand, within Sama_0677at 836.413 kb on + strand, within Sama_0677at 836.486 kb on - strand, within Sama_0677at 836.528 kb on + strand, within Sama_0677at 836.528 kb on + strand, within Sama_0677at 836.528 kb on + strand, within Sama_0677at 836.528 kb on + strand, within Sama_0677at 836.528 kb on + strand, within Sama_0677at 836.529 kb on - strand, within Sama_0677at 836.529 kb on - strand, within Sama_0677at 836.529 kb on - strand, within Sama_0677at 836.568 kb on + strand, within Sama_0677at 836.650 kb on - strand, within Sama_0677at 836.689 kb on - strand, within Sama_0677at 836.706 kb on + strand, within Sama_0677at 836.706 kb on + strand, within Sama_0677at 836.707 kb on - strand, within Sama_0677at 836.750 kb on + strand, within Sama_0677at 836.826 kb on + strand, within Sama_0677at 836.829 kb on + strand, within Sama_0677at 836.829 kb on + strand, within Sama_0677at 836.830 kb on - strand, within Sama_0677at 836.881 kb on + strand, within Sama_0677at 836.881 kb on + strand, within Sama_0677at 836.944 kb on + strand, within Sama_0677at 836.944 kb on + strand, within Sama_0677at 836.944 kb on + strand, within Sama_0677at 836.944 kb on + strand, within Sama_0677at 836.945 kb on - strand, within Sama_0677at 836.945 kb on - strand, within Sama_0677at 836.945 kb on - strand, within Sama_0677at 836.983 kb on + strand, within Sama_0677at 836.983 kb on + strand, within Sama_0677at 836.983 kb on + strand, within Sama_0677at 836.984 kb on - strand, within Sama_0677at 836.984 kb on - strand, within Sama_0677at 836.984 kb on - strand, within Sama_0677at 836.984 kb on - strand, within Sama_0677at 836.984 kb on - strand, within Sama_0677at 837.019 kb on + strandat 837.079 kb on + strandat 837.080 kb on - strandat 837.085 kb on + strandat 837.086 kb on - strandat 837.197 kb on + strandat 837.198 kb on - strandat 837.200 kb on + strandat 837.200 kb on + strandat 837.200 kb on + strandat 837.201 kb on - strandat 837.201 kb on - strandat 837.201 kb on - strandat 837.201 kb on - strandat 837.201 kb on - strandat 837.201 kb on - strandat 837.216 kb on - strandat 837.216 kb on - strandat 837.251 kb on - strandat 837.279 kb on + strandat 837.279 kb on + strandat 837.280 kb on - strandat 837.283 kb on + strandat 837.284 kb on - strandat 837.304 kb on + strandat 837.305 kb on - strandat 837.305 kb on - strandat 837.346 kb on + strandat 837.346 kb on + strandat 837.347 kb on - strandat 837.347 kb on - strandat 837.349 kb on + strandat 837.349 kb on + strandat 837.349 kb on + strandat 837.350 kb on - strandat 837.459 kb on + strand, within Sama_0678at 837.488 kb on + strand, within Sama_0678at 837.505 kb on + strand, within Sama_0678at 837.505 kb on + strand, within Sama_0678at 837.508 kb on + strand, within Sama_0678at 837.546 kb on + strand, within Sama_0678at 837.547 kb on - strand, within Sama_0678at 837.547 kb on - strand, within Sama_0678at 837.658 kb on + strand, within Sama_0678at 837.658 kb on + strand, within Sama_0678at 837.731 kb on + strandat 837.731 kb on + strandat 837.732 kb on - strandat 837.810 kb on + strandat 837.811 kb on - strandat 837.811 kb on - strandat 837.814 kb on + strandat 837.821 kb on + strandat 837.821 kb on + strandat 837.822 kb on - strandat 837.822 kb on - strandat 837.904 kb on + strandat 837.904 kb on + strandat 837.905 kb on - strandat 837.905 kb on - strandat 837.916 kb on - strandat 837.958 kb on + strandat 837.959 kb on - strandat 838.054 kb on - strandat 838.056 kb on - strandat 838.056 kb on - strandat 838.202 kb on - strandat 838.348 kb on + strandat 838.348 kb on + strandat 838.349 kb on - strandat 838.392 kb on + strandat 838.392 kb on + strandat 838.466 kb on - strand, within Sama_0679at 838.478 kb on - strand, within Sama_0679at 838.483 kb on + strand, within Sama_0679at 838.526 kb on + strand, within Sama_0679at 838.526 kb on + strand, within Sama_0679at 838.527 kb on - strand, within Sama_0679at 838.527 kb on - strand, within Sama_0679at 838.538 kb on + strand, within Sama_0679at 838.538 kb on + strand, within Sama_0679at 838.538 kb on + strand, within Sama_0679at 838.538 kb on + strand, within Sama_0679at 838.538 kb on + strand, within Sama_0679at 838.539 kb on - strand, within Sama_0679at 838.539 kb on - strand, within Sama_0679at 838.539 kb on - strand, within Sama_0679at 838.539 kb on - strand, within Sama_0679at 838.539 kb on - strand, within Sama_0679at 838.539 kb on - strand, within Sama_0679at 838.539 kb on - strand, within Sama_0679at 838.539 kb on - strand, within Sama_0679at 838.539 kb on - strand, within Sama_0679at 838.539 kb on - strand, within Sama_0679at 838.539 kb on - strand, within Sama_0679at 838.542 kb on + strand, within Sama_0679at 838.542 kb on + strand, within Sama_0679at 838.542 kb on + strand, within Sama_0679at 838.542 kb on + strand, within Sama_0679at 838.543 kb on - strand, within Sama_0679at 838.543 kb on - strand, within Sama_0679at 838.543 kb on - strand, within Sama_0679at 838.543 kb on - strand, within Sama_0679at 838.564 kb on + strand, within Sama_0679at 838.564 kb on + strand, within Sama_0679at 838.564 kb on + strand, within Sama_0679at 838.565 kb on - strand, within Sama_0679at 838.588 kb on + strand, within Sama_0679at 838.588 kb on + strand, within Sama_0679at 838.648 kb on + strand, within Sama_0679at 838.649 kb on - strand, within Sama_0679

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.005 mg/ml
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836,351 + Sama_0677 0.55 -1.1
836,351 + Sama_0677 0.55 +0.1
836,351 + Sama_0677 0.55 -1.1
836,351 + Sama_0677 0.55 -0.6
836,351 + Sama_0677 0.55 -0.3
836,352 - Sama_0677 0.55 -0.2
836,352 - Sama_0677 0.55 -1.5
836,352 - Sama_0677 0.55 +0.1
836,357 + Sama_0677 0.56 -0.5
836,357 + Sama_0677 0.56 +0.5
836,358 - Sama_0677 0.56 +0.4
836,413 + Sama_0677 0.59 +0.5
836,486 - Sama_0677 0.62 -0.2
836,528 + Sama_0677 0.65 -0.2
836,528 + Sama_0677 0.65 +2.5
836,528 + Sama_0677 0.65 -1.9
836,528 + Sama_0677 0.65 -0.4
836,528 + Sama_0677 0.65 -1.1
836,529 - Sama_0677 0.65 +0.1
836,529 - Sama_0677 0.65 -0.1
836,529 - Sama_0677 0.65 +0.1
836,568 + Sama_0677 0.67 +0.2
836,650 - Sama_0677 0.71 -0.1
836,689 - Sama_0677 0.73 -0.7
836,706 + Sama_0677 0.74 -0.7
836,706 + Sama_0677 0.74 +0.3
836,707 - Sama_0677 0.74 -0.4
836,750 + Sama_0677 0.76 +0.1
836,826 + Sama_0677 0.80 +0.5
836,829 + Sama_0677 0.80 +0.5
836,829 + Sama_0677 0.80 -1.3
836,830 - Sama_0677 0.80 +1.8
836,881 + Sama_0677 0.83 -1.2
836,881 + Sama_0677 0.83 -0.0
836,944 + Sama_0677 0.86 +0.1
836,944 + Sama_0677 0.86 +0.1
836,944 + Sama_0677 0.86 +0.6
836,944 + Sama_0677 0.86 +1.2
836,945 - Sama_0677 0.86 -0.9
836,945 - Sama_0677 0.86 -1.1
836,945 - Sama_0677 0.86 -0.0
836,983 + Sama_0677 0.88 -0.7
836,983 + Sama_0677 0.88 +1.8
836,983 + Sama_0677 0.88 +0.7
836,984 - Sama_0677 0.88 +0.1
836,984 - Sama_0677 0.88 -0.9
836,984 - Sama_0677 0.88 -0.7
836,984 - Sama_0677 0.88 -0.7
836,984 - Sama_0677 0.88 +0.1
837,019 + -0.0
837,079 + +0.1
837,080 - -0.7
837,085 + -1.2
837,086 - +0.1
837,197 + +0.8
837,198 - -0.1
837,200 + -0.8
837,200 + -2.7
837,200 + -0.8
837,201 - +0.3
837,201 - -1.9
837,201 - +1.6
837,201 - -0.2
837,201 - +0.5
837,201 - +0.7
837,216 - -1.8
837,216 - -0.7
837,251 - -3.0
837,279 + -0.1
837,279 + +0.0
837,280 - +0.4
837,283 + +0.4
837,284 - +0.1
837,304 + -0.1
837,305 - -0.1
837,305 - -0.9
837,346 + +0.6
837,346 + +0.8
837,347 - -0.6
837,347 - -0.5
837,349 + -0.1
837,349 + +0.2
837,349 + -0.1
837,350 - -0.9
837,459 + Sama_0678 0.29 +0.1
837,488 + Sama_0678 0.36 -0.1
837,505 + Sama_0678 0.41 +1.3
837,505 + Sama_0678 0.41 -1.3
837,508 + Sama_0678 0.42 -0.4
837,546 + Sama_0678 0.52 -0.1
837,547 - Sama_0678 0.52 +0.3
837,547 - Sama_0678 0.52 -0.5
837,658 + Sama_0678 0.81 +0.2
837,658 + Sama_0678 0.81 -0.9
837,731 + -1.8
837,731 + -1.2
837,732 - -0.9
837,810 + -0.0
837,811 - -0.3
837,811 - -2.3
837,814 + +0.0
837,821 + +0.5
837,821 + +0.3
837,822 - +0.5
837,822 - +0.4
837,904 + +0.6
837,904 + -0.1
837,905 - -1.6
837,905 - +1.3
837,916 - -0.5
837,958 + -0.3
837,959 - -1.3
838,054 - -0.1
838,056 - +0.2
838,056 - -0.1
838,202 - +1.6
838,348 + +0.5
838,348 + -0.0
838,349 - -0.9
838,392 + -0.0
838,392 + +2.2
838,466 - Sama_0679 0.12 -0.1
838,478 - Sama_0679 0.12 -0.4
838,483 + Sama_0679 0.13 +0.6
838,526 + Sama_0679 0.14 -0.3
838,526 + Sama_0679 0.14 +1.2
838,527 - Sama_0679 0.14 -0.4
838,527 - Sama_0679 0.14 -0.4
838,538 + Sama_0679 0.14 +0.3
838,538 + Sama_0679 0.14 +0.1
838,538 + Sama_0679 0.14 -0.3
838,538 + Sama_0679 0.14 +1.6
838,538 + Sama_0679 0.14 +0.5
838,539 - Sama_0679 0.14 -0.1
838,539 - Sama_0679 0.14 +0.2
838,539 - Sama_0679 0.14 +0.1
838,539 - Sama_0679 0.14 -0.1
838,539 - Sama_0679 0.14 -0.4
838,539 - Sama_0679 0.14 +1.0
838,539 - Sama_0679 0.14 -1.3
838,539 - Sama_0679 0.14 -0.2
838,539 - Sama_0679 0.14 +0.2
838,539 - Sama_0679 0.14 +0.3
838,539 - Sama_0679 0.14 -0.6
838,542 + Sama_0679 0.14 +0.2
838,542 + Sama_0679 0.14 -1.8
838,542 + Sama_0679 0.14 +0.4
838,542 + Sama_0679 0.14 -0.5
838,543 - Sama_0679 0.15 -0.3
838,543 - Sama_0679 0.15 +0.8
838,543 - Sama_0679 0.15 -0.4
838,543 - Sama_0679 0.15 -0.1
838,564 + Sama_0679 0.15 +0.1
838,564 + Sama_0679 0.15 +1.0
838,564 + Sama_0679 0.15 +0.3
838,565 - Sama_0679 0.15 +0.2
838,588 + Sama_0679 0.16 +0.2
838,588 + Sama_0679 0.16 +0.9
838,648 + Sama_0679 0.18 -0.9
838,649 - Sama_0679 0.18 +0.9

Or see this region's nucleotide sequence