Strain Fitness in Shewanella oneidensis MR-1 around SO2307

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO2306 and lolA are separated by 69 nucleotideslolA and SO2308 are separated by 2 nucleotides SO2306: SO2306 - cell division protein FtsK, putative (NCBI ptt file), at 2,417,093 to 2,419,828 SO2306 SO2307: lolA - outer membrane lipoprotein carrier protein LolA (NCBI ptt file), at 2,419,898 to 2,420,518 lolA SO2308: SO2308 - ATPase, AAA family (NCBI ptt file), at 2,420,521 to 2,421,858 SO2308 Position (kb) 2419 2420 2421Strain fitness (log2 ratio) -3 -2 -1 0 1at 2418.937 kb on + strand, within SO2306at 2419.526 kb on + strand, within SO2306at 2420.649 kb on - strandat 2421.046 kb on - strand, within SO2308at 2421.190 kb on - strand, within SO2308

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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2,418,937 + SO2306 0.67 -1.3
2,419,526 + SO2306 0.89 -3.0
2,420,649 - +0.4
2,421,046 - SO2308 0.39 -1.0
2,421,190 - SO2308 0.50 -0.7

Or see this region's nucleotide sequence