Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pepA-1 and SO0960 are separated by 89 nucleotides SO0960 and SO0961 are separated by 183 nucleotides SO0961 and SO0962 are separated by 245 nucleotides
SO0959: pepA-1 - cytosol aminopeptidase (NCBI ptt file), at 993,944 to 995,479
pepA-1
SO0960: SO0960 - hypothetical spermidine synthase (NCBI ptt file), at 995,569 to 996,312
SO0960
SO0961: SO0961 - conserved hypothetical protein (NCBI ptt file), at 996,496 to 996,948
SO0961
SO0962: SO0962 - conserved hypothetical protein (NCBI ptt file), at 997,194 to 997,718
SO0962
Position (kb) 995
996
997 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 994.590 kb on + strand, within pepA-1 at 994.603 kb on + strand, within pepA-1 at 994.649 kb on + strand, within pepA-1 at 994.657 kb on - strand, within pepA-1 at 994.657 kb on - strand, within pepA-1 at 994.703 kb on - strand, within pepA-1 at 994.762 kb on + strand, within pepA-1 at 994.770 kb on - strand, within pepA-1 at 994.809 kb on - strand, within pepA-1 at 994.844 kb on + strand, within pepA-1 at 994.872 kb on + strand, within pepA-1 at 995.019 kb on - strand, within pepA-1 at 995.034 kb on - strand, within pepA-1 at 995.034 kb on - strand, within pepA-1 at 995.044 kb on + strand, within pepA-1 at 995.044 kb on + strand, within pepA-1 at 995.047 kb on - strand, within pepA-1 at 995.052 kb on - strand, within pepA-1 at 995.054 kb on + strand, within pepA-1 at 995.132 kb on + strand, within pepA-1 at 995.224 kb on + strand, within pepA-1 at 995.232 kb on - strand, within pepA-1 at 995.338 kb on + strand at 995.338 kb on + strand at 995.346 kb on + strand at 995.354 kb on - strand at 995.356 kb on + strand at 995.356 kb on + strand at 995.356 kb on + strand at 995.356 kb on + strand at 995.356 kb on + strand at 995.356 kb on + strand at 995.364 kb on - strand at 995.364 kb on - strand at 995.364 kb on - strand at 995.424 kb on + strand at 995.425 kb on + strand at 995.432 kb on - strand at 995.435 kb on + strand at 995.435 kb on + strand at 995.443 kb on - strand at 995.443 kb on - strand at 995.500 kb on - strand at 995.500 kb on - strand at 995.504 kb on + strand at 995.512 kb on - strand at 995.526 kb on + strand at 995.526 kb on + strand at 995.526 kb on + strand at 995.534 kb on - strand at 995.534 kb on - strand at 995.534 kb on - strand at 995.534 kb on - strand at 995.549 kb on - strand at 995.632 kb on + strand at 995.701 kb on + strand, within SO0960 at 995.709 kb on - strand, within SO0960 at 995.859 kb on + strand, within SO0960 at 995.875 kb on - strand, within SO0960 at 995.875 kb on - strand, within SO0960 at 995.887 kb on + strand, within SO0960 at 995.999 kb on + strand, within SO0960 at 996.072 kb on + strand, within SO0960 at 996.072 kb on + strand, within SO0960 at 996.080 kb on - strand, within SO0960 at 996.100 kb on + strand, within SO0960 at 996.116 kb on + strand, within SO0960 at 996.116 kb on + strand, within SO0960 at 996.154 kb on - strand, within SO0960 at 996.156 kb on + strand, within SO0960 at 996.159 kb on + strand, within SO0960 at 996.164 kb on - strand, within SO0960 at 996.164 kb on - strand, within SO0960 at 996.164 kb on - strand, within SO0960 at 996.227 kb on - strand, within SO0960 at 996.245 kb on + strand at 996.267 kb on + strand at 996.275 kb on - strand at 996.362 kb on - strand at 996.464 kb on + strand at 996.471 kb on - strand at 996.472 kb on - strand at 996.504 kb on + strand at 996.504 kb on + strand at 996.504 kb on + strand at 996.507 kb on - strand at 996.512 kb on - strand at 996.512 kb on - strand at 996.512 kb on - strand at 996.512 kb on - strand at 996.512 kb on - strand at 996.572 kb on + strand, within SO0961 at 996.587 kb on + strand, within SO0961 at 996.595 kb on - strand, within SO0961 at 996.602 kb on + strand, within SO0961 at 996.650 kb on - strand, within SO0961 at 996.668 kb on + strand, within SO0961 at 996.676 kb on - strand, within SO0961 at 996.676 kb on - strand, within SO0961 at 996.731 kb on - strand, within SO0961 at 996.731 kb on - strand, within SO0961 at 996.733 kb on - strand, within SO0961 at 996.758 kb on - strand, within SO0961 at 996.765 kb on - strand, within SO0961 at 996.824 kb on - strand, within SO0961 at 996.979 kb on - strand at 997.141 kb on - strand at 997.164 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 994,590 + pepA-1 SO0959 0.42 +0.4 994,603 + pepA-1 SO0959 0.43 +0.6 994,649 + pepA-1 SO0959 0.46 -0.3 994,657 - pepA-1 SO0959 0.46 +1.5 994,657 - pepA-1 SO0959 0.46 -0.1 994,703 - pepA-1 SO0959 0.49 -1.6 994,762 + pepA-1 SO0959 0.53 +0.3 994,770 - pepA-1 SO0959 0.54 -0.5 994,809 - pepA-1 SO0959 0.56 -1.8 994,844 + pepA-1 SO0959 0.59 -0.5 994,872 + pepA-1 SO0959 0.60 -0.1 995,019 - pepA-1 SO0959 0.70 +1.3 995,034 - pepA-1 SO0959 0.71 +0.2 995,034 - pepA-1 SO0959 0.71 -0.4 995,044 + pepA-1 SO0959 0.72 +0.8 995,044 + pepA-1 SO0959 0.72 -0.5 995,047 - pepA-1 SO0959 0.72 -0.2 995,052 - pepA-1 SO0959 0.72 -0.3 995,054 + pepA-1 SO0959 0.72 -2.3 995,132 + pepA-1 SO0959 0.77 -0.4 995,224 + pepA-1 SO0959 0.83 -1.4 995,232 - pepA-1 SO0959 0.84 -0.0 995,338 + +0.4 995,338 + +1.7 995,346 + -2.2 995,354 - -0.3 995,356 + +0.5 995,356 + -0.9 995,356 + -0.4 995,356 + -0.6 995,356 + +0.5 995,356 + -0.0 995,364 - -1.6 995,364 - -0.3 995,364 - +0.4 995,424 + +0.3 995,425 + +0.3 995,432 - -0.8 995,435 + -0.5 995,435 + +0.7 995,443 - +0.2 995,443 - +1.0 995,500 - +0.2 995,500 - -1.4 995,504 + +0.6 995,512 - +0.9 995,526 + -0.4 995,526 + -0.4 995,526 + -0.3 995,534 - -1.0 995,534 - -0.8 995,534 - -0.3 995,534 - -0.4 995,549 - -0.4 995,632 + +3.2 995,701 + SO0960 0.18 -1.4 995,709 - SO0960 0.19 +1.7 995,859 + SO0960 0.39 -0.5 995,875 - SO0960 0.41 +1.2 995,875 - SO0960 0.41 +0.3 995,887 + SO0960 0.43 +1.0 995,999 + SO0960 0.58 -1.4 996,072 + SO0960 0.68 -0.3 996,072 + SO0960 0.68 +0.8 996,080 - SO0960 0.69 -0.1 996,100 + SO0960 0.71 -0.3 996,116 + SO0960 0.74 +0.6 996,116 + SO0960 0.74 +1.0 996,154 - SO0960 0.79 +0.6 996,156 + SO0960 0.79 +0.1 996,159 + SO0960 0.79 -1.3 996,164 - SO0960 0.80 +0.3 996,164 - SO0960 0.80 +0.9 996,164 - SO0960 0.80 -0.8 996,227 - SO0960 0.88 -0.2 996,245 + -2.6 996,267 + -0.5 996,275 - -0.1 996,362 - +1.1 996,464 + +0.9 996,471 - -0.6 996,472 - +1.6 996,504 + +0.5 996,504 + -0.3 996,504 + +0.1 996,507 - -0.7 996,512 - -1.5 996,512 - -0.2 996,512 - -1.1 996,512 - -1.2 996,512 - +0.7 996,572 + SO0961 0.17 -1.3 996,587 + SO0961 0.20 -0.5 996,595 - SO0961 0.22 -0.1 996,602 + SO0961 0.23 +0.8 996,650 - SO0961 0.34 +0.7 996,668 + SO0961 0.38 -0.0 996,676 - SO0961 0.40 +0.4 996,676 - SO0961 0.40 +0.0 996,731 - SO0961 0.52 -0.4 996,731 - SO0961 0.52 +0.2 996,733 - SO0961 0.52 +1.0 996,758 - SO0961 0.58 +0.2 996,765 - SO0961 0.59 +0.1 996,824 - SO0961 0.72 +0.2 996,979 - -1.8 997,141 - +0.9 997,164 + +0.5
Or see this region's nucleotide sequence