Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0796 and SO0797 are separated by 254 nucleotides SO0797 and SO0798 overlap by 1 nucleotides
SO0796: SO0796 - GGDEF family protein (NCBI ptt file), at 808,860 to 809,771
SO0796
SO0797: SO0797 - hypothetical protein (NCBI ptt file), at 810,026 to 810,487
SO0797
SO0798: SO0798 - conserved hypothetical protein (NCBI ptt file), at 810,487 to 812,649
SO0798
Position (kb) 810
811 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 809.086 kb on - strand, within SO0796 at 809.096 kb on - strand, within SO0796 at 809.312 kb on - strand, within SO0796 at 809.320 kb on + strand, within SO0796 at 809.332 kb on + strand, within SO0796 at 809.372 kb on + strand, within SO0796 at 809.379 kb on - strand, within SO0796 at 809.407 kb on + strand, within SO0796 at 809.496 kb on + strand, within SO0796 at 809.583 kb on + strand, within SO0796 at 809.806 kb on + strand at 809.814 kb on - strand at 809.818 kb on - strand at 809.890 kb on + strand at 809.898 kb on - strand at 809.898 kb on - strand at 809.899 kb on + strand at 809.944 kb on + strand at 810.017 kb on + strand at 810.031 kb on - strand at 810.122 kb on + strand, within SO0797 at 810.307 kb on + strand, within SO0797 at 810.332 kb on - strand, within SO0797 at 810.410 kb on - strand, within SO0797 at 810.428 kb on - strand, within SO0797 at 810.450 kb on + strand at 810.610 kb on - strand at 810.630 kb on + strand at 810.630 kb on + strand at 810.638 kb on - strand at 810.638 kb on - strand at 810.638 kb on - strand at 810.638 kb on - strand at 810.696 kb on - strand at 810.754 kb on + strand, within SO0798 at 810.754 kb on + strand, within SO0798 at 810.754 kb on + strand, within SO0798 at 810.762 kb on - strand, within SO0798 at 810.762 kb on - strand, within SO0798 at 810.844 kb on - strand, within SO0798 at 810.923 kb on + strand, within SO0798 at 810.924 kb on - strand, within SO0798 at 810.930 kb on + strand, within SO0798 at 810.938 kb on - strand, within SO0798 at 810.938 kb on - strand, within SO0798 at 810.938 kb on - strand, within SO0798 at 810.938 kb on - strand, within SO0798 at 811.096 kb on + strand, within SO0798 at 811.096 kb on + strand, within SO0798 at 811.114 kb on - strand, within SO0798 at 811.148 kb on - strand, within SO0798 at 811.210 kb on + strand, within SO0798 at 811.210 kb on + strand, within SO0798 at 811.210 kb on + strand, within SO0798 at 811.210 kb on + strand, within SO0798 at 811.218 kb on - strand, within SO0798 at 811.218 kb on - strand, within SO0798 at 811.281 kb on + strand, within SO0798 at 811.287 kb on + strand, within SO0798 at 811.288 kb on - strand, within SO0798 at 811.317 kb on - strand, within SO0798 at 811.369 kb on - strand, within SO0798 at 811.369 kb on - strand, within SO0798
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 809,086 - SO0796 0.25 +0.5 809,096 - SO0796 0.26 -3.2 809,312 - SO0796 0.50 +0.1 809,320 + SO0796 0.50 +0.3 809,332 + SO0796 0.52 -0.9 809,372 + SO0796 0.56 +1.1 809,379 - SO0796 0.57 -1.5 809,407 + SO0796 0.60 -0.2 809,496 + SO0796 0.70 +1.0 809,583 + SO0796 0.79 +0.9 809,806 + +1.0 809,814 - -0.9 809,818 - +0.7 809,890 + -1.4 809,898 - -0.4 809,898 - -0.2 809,899 + +1.1 809,944 + -1.0 810,017 + -0.1 810,031 - -0.7 810,122 + SO0797 0.21 -2.2 810,307 + SO0797 0.61 +1.2 810,332 - SO0797 0.66 -1.8 810,410 - SO0797 0.83 -1.9 810,428 - SO0797 0.87 -0.6 810,450 + -1.1 810,610 - +1.9 810,630 + -0.8 810,630 + -1.2 810,638 - +2.0 810,638 - -0.1 810,638 - -0.8 810,638 - +0.5 810,696 - +1.1 810,754 + SO0798 0.12 +0.9 810,754 + SO0798 0.12 -0.9 810,754 + SO0798 0.12 -0.3 810,762 - SO0798 0.13 +0.6 810,762 - SO0798 0.13 +0.5 810,844 - SO0798 0.17 +0.0 810,923 + SO0798 0.20 +0.9 810,924 - SO0798 0.20 +1.2 810,930 + SO0798 0.20 +0.3 810,938 - SO0798 0.21 -0.1 810,938 - SO0798 0.21 +1.3 810,938 - SO0798 0.21 +0.3 810,938 - SO0798 0.21 -0.2 811,096 + SO0798 0.28 -0.9 811,096 + SO0798 0.28 -1.8 811,114 - SO0798 0.29 -0.6 811,148 - SO0798 0.31 -0.6 811,210 + SO0798 0.33 +0.5 811,210 + SO0798 0.33 +1.2 811,210 + SO0798 0.33 +0.1 811,210 + SO0798 0.33 -0.1 811,218 - SO0798 0.34 +0.4 811,218 - SO0798 0.34 -0.4 811,281 + SO0798 0.37 +0.2 811,287 + SO0798 0.37 +1.4 811,288 - SO0798 0.37 +0.0 811,317 - SO0798 0.38 -1.5 811,369 - SO0798 0.41 +0.2 811,369 - SO0798 0.41 +1.0
Or see this region's nucleotide sequence