Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0616 and argD are separated by 308 nucleotides argD and astA are separated by 126 nucleotides
SO0616: SO0616 - esterase, putative (NCBI ptt file), at 642,233 to 643,144
SO0616
SO0617: argD - acetylornithine aminotransferase (NCBI ptt file), at 643,453 to 644,670
argD
SO0618: astA - arginine N-succinyltransferase (NCBI ptt file), at 644,797 to 645,816
astA
Position (kb) 643
644
645 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 642.751 kb on + strand, within SO0616 at 642.847 kb on - strand, within SO0616 at 642.864 kb on + strand, within SO0616 at 642.864 kb on + strand at 642.935 kb on + strand, within SO0616 at 642.981 kb on + strand, within SO0616 at 643.390 kb on + strand at 643.470 kb on - strand at 643.627 kb on + strand, within argD at 643.787 kb on + strand, within argD at 643.875 kb on - strand, within argD at 643.949 kb on + strand, within argD at 644.073 kb on + strand, within argD at 644.073 kb on + strand, within argD at 644.073 kb on + strand, within argD at 644.073 kb on + strand, within argD at 644.073 kb on + strand, within argD at 644.081 kb on - strand, within argD at 644.081 kb on - strand, within argD at 644.081 kb on - strand, within argD at 644.081 kb on - strand, within argD at 644.081 kb on - strand, within argD at 644.081 kb on - strand, within argD at 644.081 kb on - strand, within argD at 644.081 kb on - strand, within argD at 644.155 kb on + strand, within argD at 644.160 kb on + strand, within argD at 644.160 kb on + strand, within argD at 644.160 kb on + strand, within argD at 644.306 kb on - strand, within argD at 644.322 kb on - strand, within argD at 644.341 kb on + strand, within argD at 644.368 kb on - strand, within argD at 644.378 kb on + strand, within argD at 644.378 kb on + strand, within argD at 644.378 kb on + strand, within argD at 644.386 kb on - strand, within argD at 644.472 kb on + strand, within argD at 644.665 kb on + strand at 644.728 kb on - strand at 644.766 kb on - strand at 644.776 kb on - strand at 644.800 kb on - strand at 644.804 kb on - strand at 644.817 kb on - strand at 644.878 kb on - strand at 645.084 kb on + strand, within astA at 645.089 kb on + strand, within astA at 645.090 kb on - strand, within astA at 645.092 kb on - strand, within astA at 645.092 kb on - strand, within astA at 645.132 kb on - strand, within astA at 645.133 kb on - strand, within astA at 645.149 kb on - strand, within astA at 645.155 kb on + strand, within astA at 645.170 kb on - strand, within astA at 645.321 kb on + strand, within astA at 645.423 kb on + strand, within astA at 645.423 kb on + strand, within astA at 645.431 kb on - strand, within astA at 645.441 kb on - strand, within astA at 645.481 kb on + strand, within astA at 645.481 kb on + strand, within astA at 645.483 kb on + strand, within astA at 645.503 kb on + strand, within astA at 645.503 kb on + strand, within astA at 645.511 kb on - strand, within astA at 645.511 kb on - strand, within astA at 645.582 kb on - strand, within astA at 645.653 kb on - strand, within astA
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 642,751 + SO0616 0.57 -0.3 642,847 - SO0616 0.67 -0.5 642,864 + SO0616 0.69 -0.5 642,864 + -0.0 642,935 + SO0616 0.77 -0.4 642,981 + SO0616 0.82 -0.4 643,390 + -0.5 643,470 - -2.5 643,627 + argD SO0617 0.14 -1.6 643,787 + argD SO0617 0.27 -3.0 643,875 - argD SO0617 0.35 -2.9 643,949 + argD SO0617 0.41 -2.3 644,073 + argD SO0617 0.51 -4.4 644,073 + argD SO0617 0.51 -3.2 644,073 + argD SO0617 0.51 -0.2 644,073 + argD SO0617 0.51 -3.8 644,073 + argD SO0617 0.51 -1.1 644,081 - argD SO0617 0.52 -2.3 644,081 - argD SO0617 0.52 -1.3 644,081 - argD SO0617 0.52 -1.7 644,081 - argD SO0617 0.52 -2.2 644,081 - argD SO0617 0.52 -1.8 644,081 - argD SO0617 0.52 -0.8 644,081 - argD SO0617 0.52 -0.3 644,081 - argD SO0617 0.52 -3.7 644,155 + argD SO0617 0.58 -2.7 644,160 + argD SO0617 0.58 -4.3 644,160 + argD SO0617 0.58 -0.9 644,160 + argD SO0617 0.58 -2.9 644,306 - argD SO0617 0.70 -0.9 644,322 - argD SO0617 0.71 -1.8 644,341 + argD SO0617 0.73 -2.2 644,368 - argD SO0617 0.75 -2.7 644,378 + argD SO0617 0.76 -3.3 644,378 + argD SO0617 0.76 -2.4 644,378 + argD SO0617 0.76 -4.5 644,386 - argD SO0617 0.77 -1.6 644,472 + argD SO0617 0.84 -2.9 644,665 + -1.8 644,728 - +0.6 644,766 - +0.7 644,776 - +1.4 644,800 - +1.2 644,804 - +1.3 644,817 - +0.1 644,878 - +1.3 645,084 + astA SO0618 0.28 +1.6 645,089 + astA SO0618 0.29 +0.7 645,090 - astA SO0618 0.29 +0.7 645,092 - astA SO0618 0.29 +0.4 645,092 - astA SO0618 0.29 +0.1 645,132 - astA SO0618 0.33 +1.7 645,133 - astA SO0618 0.33 +0.1 645,149 - astA SO0618 0.35 +1.5 645,155 + astA SO0618 0.35 -0.7 645,170 - astA SO0618 0.37 +1.6 645,321 + astA SO0618 0.51 +1.6 645,423 + astA SO0618 0.61 +2.2 645,423 + astA SO0618 0.61 +0.6 645,431 - astA SO0618 0.62 +1.1 645,441 - astA SO0618 0.63 +0.5 645,481 + astA SO0618 0.67 +1.3 645,481 + astA SO0618 0.67 +1.2 645,483 + astA SO0618 0.67 +1.2 645,503 + astA SO0618 0.69 +0.5 645,503 + astA SO0618 0.69 +1.1 645,511 - astA SO0618 0.70 +1.0 645,511 - astA SO0618 0.70 +2.9 645,582 - astA SO0618 0.77 +3.3 645,653 - astA SO0618 0.84 +0.8
Or see this region's nucleotide sequence