Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0330 and SO0331 overlap by 1 nucleotides SO0331 and SO0332 are separated by 40 nucleotides SO0332 and dsbA are separated by 126 nucleotides
SO0330: SO0330 - conserved hypothetical protein (NCBI ptt file), at 332,721 to 334,175
SO0330
SO0331: SO0331 - conserved hypothetical protein (NCBI ptt file), at 334,175 to 334,480
SO0331
SO0332: SO0332 - hypothetical kinase (NCBI ptt file), at 334,521 to 335,558
SO0332
SO0333: dsbA - thiol:disulfide interchange protein DsbA (NCBI ptt file), at 335,685 to 336,293
dsbA
Position (kb) 334
335
336 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 333.611 kb on + strand, within SO0330 at 333.614 kb on + strand, within SO0330 at 333.639 kb on - strand, within SO0330 at 333.651 kb on + strand, within SO0330 at 333.673 kb on + strand, within SO0330 at 333.673 kb on + strand, within SO0330 at 333.673 kb on + strand, within SO0330 at 333.673 kb on + strand, within SO0330 at 333.681 kb on - strand, within SO0330 at 333.681 kb on - strand, within SO0330 at 333.681 kb on - strand, within SO0330 at 333.683 kb on + strand, within SO0330 at 333.686 kb on - strand, within SO0330 at 333.716 kb on - strand, within SO0330 at 333.718 kb on - strand, within SO0330 at 333.768 kb on - strand, within SO0330 at 333.768 kb on - strand, within SO0330 at 333.934 kb on + strand, within SO0330 at 333.934 kb on + strand, within SO0330 at 333.988 kb on - strand, within SO0330 at 334.096 kb on - strand at 334.227 kb on + strand, within SO0331 at 334.227 kb on + strand, within SO0331 at 334.227 kb on + strand, within SO0331 at 334.228 kb on - strand, within SO0331 at 334.235 kb on - strand, within SO0331 at 334.428 kb on - strand, within SO0331 at 334.462 kb on + strand at 334.470 kb on - strand at 334.542 kb on - strand at 334.542 kb on - strand at 334.542 kb on - strand at 334.550 kb on - strand at 334.606 kb on - strand at 334.641 kb on - strand, within SO0332 at 334.641 kb on - strand, within SO0332 at 334.657 kb on + strand, within SO0332 at 334.713 kb on + strand, within SO0332 at 334.713 kb on + strand, within SO0332 at 334.834 kb on - strand, within SO0332 at 334.836 kb on + strand, within SO0332 at 334.836 kb on + strand, within SO0332 at 334.836 kb on + strand, within SO0332 at 334.836 kb on + strand, within SO0332 at 334.836 kb on + strand, within SO0332 at 334.836 kb on + strand, within SO0332 at 334.842 kb on + strand, within SO0332 at 334.843 kb on + strand, within SO0332 at 334.844 kb on - strand, within SO0332 at 334.844 kb on - strand, within SO0332 at 334.851 kb on - strand, within SO0332 at 334.851 kb on - strand, within SO0332 at 334.929 kb on - strand, within SO0332 at 334.967 kb on + strand, within SO0332 at 335.004 kb on - strand, within SO0332 at 335.044 kb on + strand, within SO0332 at 335.044 kb on + strand, within SO0332 at 335.062 kb on - strand, within SO0332 at 335.062 kb on - strand, within SO0332 at 335.109 kb on + strand, within SO0332 at 335.120 kb on + strand, within SO0332 at 335.128 kb on - strand, within SO0332 at 335.128 kb on - strand, within SO0332 at 335.128 kb on - strand, within SO0332 at 335.128 kb on - strand, within SO0332 at 335.146 kb on + strand, within SO0332 at 335.369 kb on + strand, within SO0332 at 335.369 kb on + strand, within SO0332 at 335.369 kb on + strand, within SO0332 at 335.377 kb on - strand, within SO0332 at 335.377 kb on - strand, within SO0332 at 335.405 kb on - strand, within SO0332 at 335.425 kb on - strand, within SO0332 at 335.525 kb on + strand at 335.542 kb on + strand at 335.609 kb on - strand at 335.891 kb on + strand, within dsbA at 335.979 kb on + strand, within dsbA at 336.083 kb on + strand, within dsbA at 336.091 kb on + strand, within dsbA at 336.107 kb on - strand, within dsbA at 336.189 kb on + strand, within dsbA at 336.245 kb on + strand at 336.248 kb on - strand at 336.270 kb on + strand at 336.278 kb on - strand at 336.483 kb on + strand at 336.488 kb on + strand at 336.496 kb on - strand at 336.509 kb on - strand at 336.516 kb on - strand at 336.516 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 333,611 + SO0330 0.61 -1.2 333,614 + SO0330 0.61 +0.1 333,639 - SO0330 0.63 -1.2 333,651 + SO0330 0.64 +0.0 333,673 + SO0330 0.65 +0.3 333,673 + SO0330 0.65 -0.7 333,673 + SO0330 0.65 -1.4 333,673 + SO0330 0.65 -1.6 333,681 - SO0330 0.66 -0.9 333,681 - SO0330 0.66 +0.7 333,681 - SO0330 0.66 +0.6 333,683 + SO0330 0.66 -1.5 333,686 - SO0330 0.66 -0.2 333,716 - SO0330 0.68 +0.8 333,718 - SO0330 0.69 -2.6 333,768 - SO0330 0.72 -0.4 333,768 - SO0330 0.72 +2.5 333,934 + SO0330 0.83 +3.0 333,934 + SO0330 0.83 -0.9 333,988 - SO0330 0.87 +0.0 334,096 - +0.5 334,227 + SO0331 0.17 -1.2 334,227 + SO0331 0.17 -2.9 334,227 + SO0331 0.17 -0.9 334,228 - SO0331 0.17 +1.5 334,235 - SO0331 0.20 -1.4 334,428 - SO0331 0.83 -0.2 334,462 + -2.4 334,470 - -0.0 334,542 - -0.2 334,542 - -2.0 334,542 - +0.8 334,550 - -0.4 334,606 - +0.3 334,641 - SO0332 0.12 -0.1 334,641 - SO0332 0.12 -0.3 334,657 + SO0332 0.13 -1.0 334,713 + SO0332 0.18 -0.3 334,713 + SO0332 0.18 -0.9 334,834 - SO0332 0.30 -0.1 334,836 + SO0332 0.30 -0.8 334,836 + SO0332 0.30 -1.0 334,836 + SO0332 0.30 -1.5 334,836 + SO0332 0.30 -0.5 334,836 + SO0332 0.30 +0.0 334,836 + SO0332 0.30 -1.6 334,842 + SO0332 0.31 -0.3 334,843 + SO0332 0.31 +0.8 334,844 - SO0332 0.31 -0.3 334,844 - SO0332 0.31 +0.3 334,851 - SO0332 0.32 +0.9 334,851 - SO0332 0.32 -2.2 334,929 - SO0332 0.39 -0.2 334,967 + SO0332 0.43 -1.2 335,004 - SO0332 0.47 +0.9 335,044 + SO0332 0.50 -0.8 335,044 + SO0332 0.50 +1.0 335,062 - SO0332 0.52 -1.6 335,062 - SO0332 0.52 -0.6 335,109 + SO0332 0.57 +0.1 335,120 + SO0332 0.58 +1.4 335,128 - SO0332 0.58 -0.9 335,128 - SO0332 0.58 +1.9 335,128 - SO0332 0.58 -1.6 335,128 - SO0332 0.58 -2.4 335,146 + SO0332 0.60 -1.9 335,369 + SO0332 0.82 +0.4 335,369 + SO0332 0.82 -0.6 335,369 + SO0332 0.82 -2.2 335,377 - SO0332 0.82 +0.5 335,377 - SO0332 0.82 +0.3 335,405 - SO0332 0.85 +1.4 335,425 - SO0332 0.87 -1.8 335,525 + +0.4 335,542 + +0.0 335,609 - -0.1 335,891 + dsbA SO0333 0.34 +1.6 335,979 + dsbA SO0333 0.48 +1.9 336,083 + dsbA SO0333 0.65 +1.2 336,091 + dsbA SO0333 0.67 +1.0 336,107 - dsbA SO0333 0.69 +0.0 336,189 + dsbA SO0333 0.83 +1.1 336,245 + +1.6 336,248 - +1.2 336,270 + +1.0 336,278 - -0.2 336,483 + +1.3 336,488 + +0.7 336,496 - +1.6 336,509 - +0.3 336,516 - +0.1 336,516 - +0.1
Or see this region's nucleotide sequence