Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cinA and SO0273 are separated by 96 nucleotides SO0273 and ppc overlap by 1 nucleotides
SO0272: cinA - competence/damage-inducible protein CinA (NCBI ptt file), at 275,264 to 276,538
cinA
SO0273: SO0273 - conserved hypothetical protein (NCBI ptt file), at 276,635 to 277,180
SO0273
SO0274: ppc - phosphoenolpyruvate carboxylase (NCBI ptt file), at 277,180 to 279,825
ppc
Position (kb) 276
277
278 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 275.678 kb on - strand, within cinA at 275.684 kb on - strand, within cinA at 275.704 kb on + strand, within cinA at 275.784 kb on - strand, within cinA at 275.835 kb on - strand, within cinA at 275.898 kb on + strand, within cinA at 275.992 kb on + strand, within cinA at 276.021 kb on - strand, within cinA at 276.093 kb on - strand, within cinA at 276.093 kb on - strand, within cinA at 276.144 kb on + strand, within cinA at 276.320 kb on + strand, within cinA at 276.569 kb on - strand at 276.778 kb on + strand, within SO0273 at 276.784 kb on - strand, within SO0273 at 276.864 kb on - strand, within SO0273 at 276.888 kb on + strand, within SO0273 at 276.903 kb on - strand, within SO0273 at 277.024 kb on + strand, within SO0273 at 277.102 kb on + strand, within SO0273 at 277.112 kb on + strand, within SO0273 at 277.112 kb on + strand, within SO0273 at 277.143 kb on - strand at 277.371 kb on - strand at 277.403 kb on - strand at 277.427 kb on - strand at 277.447 kb on - strand, within ppc at 277.514 kb on + strand, within ppc at 277.532 kb on + strand, within ppc at 277.655 kb on - strand, within ppc at 277.842 kb on + strand, within ppc at 277.907 kb on + strand, within ppc at 277.935 kb on - strand, within ppc at 277.939 kb on + strand, within ppc at 277.939 kb on + strand, within ppc at 277.939 kb on + strand, within ppc at 277.939 kb on + strand, within ppc at 277.940 kb on - strand, within ppc at 277.947 kb on - strand, within ppc at 277.947 kb on - strand, within ppc at 278.000 kb on - strand, within ppc at 278.163 kb on - strand, within ppc at 278.163 kb on - strand, within ppc
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 275,678 - cinA SO0272 0.32 +0.8 275,684 - cinA SO0272 0.33 +0.6 275,704 + cinA SO0272 0.35 +0.9 275,784 - cinA SO0272 0.41 -0.3 275,835 - cinA SO0272 0.45 +0.5 275,898 + cinA SO0272 0.50 -0.4 275,992 + cinA SO0272 0.57 -2.2 276,021 - cinA SO0272 0.59 +1.0 276,093 - cinA SO0272 0.65 +1.0 276,093 - cinA SO0272 0.65 +0.5 276,144 + cinA SO0272 0.69 +0.3 276,320 + cinA SO0272 0.83 +0.9 276,569 - +0.1 276,778 + SO0273 0.26 +1.6 276,784 - SO0273 0.27 -1.1 276,864 - SO0273 0.42 +1.0 276,888 + SO0273 0.46 +1.4 276,903 - SO0273 0.49 +0.1 277,024 + SO0273 0.71 +0.3 277,102 + SO0273 0.86 -0.3 277,112 + SO0273 0.87 -0.3 277,112 + SO0273 0.87 -1.4 277,143 - -0.1 277,371 - -5.5 277,403 - -4.5 277,427 - -2.1 277,447 - ppc SO0274 0.10 -3.1 277,514 + ppc SO0274 0.13 -3.9 277,532 + ppc SO0274 0.13 -4.2 277,655 - ppc SO0274 0.18 -3.9 277,842 + ppc SO0274 0.25 -3.3 277,907 + ppc SO0274 0.27 -2.3 277,935 - ppc SO0274 0.29 -2.0 277,939 + ppc SO0274 0.29 -3.0 277,939 + ppc SO0274 0.29 -3.3 277,939 + ppc SO0274 0.29 -4.5 277,939 + ppc SO0274 0.29 -5.1 277,940 - ppc SO0274 0.29 -2.2 277,947 - ppc SO0274 0.29 -2.7 277,947 - ppc SO0274 0.29 -4.0 278,000 - ppc SO0274 0.31 -4.6 278,163 - ppc SO0274 0.37 -3.4 278,163 - ppc SO0274 0.37 -1.1
Or see this region's nucleotide sequence