Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00020 and PGA1_65p00030 overlap by 4 nucleotides PGA1_65p00030 and PGA1_65p00040 are separated by 162 nucleotides
PGA1_65p00020: PGA1_65p00020 - putative type I secretion membrane fusion protein, at 1,376 to 2,779
_65p00020
PGA1_65p00030: PGA1_65p00030 - putative type I secretion system ATPase, at 2,776 to 4,539
_65p00030
PGA1_65p00040: PGA1_65p00040 - RTX toxins and related Ca2+-binding proteins, at 4,702 to 7,215
_65p00040
Position (kb) 2
3
4
5 Strain fitness (log2 ratio) -1
0
1
2 at 1.785 kb on - strand, within PGA1_65p00020 at 1.987 kb on + strand, within PGA1_65p00020 at 1.989 kb on - strand, within PGA1_65p00020 at 2.669 kb on - strand at 2.683 kb on + strand at 2.683 kb on + strand at 2.774 kb on + strand at 2.856 kb on + strand at 2.875 kb on - strand at 3.023 kb on - strand, within PGA1_65p00030 at 3.153 kb on - strand, within PGA1_65p00030 at 3.255 kb on + strand, within PGA1_65p00030 at 3.307 kb on + strand, within PGA1_65p00030 at 3.433 kb on - strand, within PGA1_65p00030 at 3.461 kb on + strand, within PGA1_65p00030 at 3.512 kb on + strand, within PGA1_65p00030 at 3.545 kb on + strand, within PGA1_65p00030 at 3.928 kb on + strand, within PGA1_65p00030 at 3.937 kb on - strand, within PGA1_65p00030 at 4.047 kb on + strand, within PGA1_65p00030 at 4.129 kb on + strand, within PGA1_65p00030 at 4.318 kb on + strand, within PGA1_65p00030 at 4.402 kb on + strand at 4.542 kb on - strand at 4.556 kb on - strand at 4.607 kb on + strand at 4.657 kb on - strand at 4.936 kb on + strand at 4.969 kb on + strand, within PGA1_65p00040 at 5.028 kb on - strand, within PGA1_65p00040 at 5.028 kb on - strand at 5.134 kb on - strand, within PGA1_65p00040 at 5.289 kb on - strand at 5.317 kb on - strand, within PGA1_65p00040 at 5.428 kb on + strand, within PGA1_65p00040 at 5.497 kb on + strand, within PGA1_65p00040
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 1,785 - PGA1_65p00020 0.29 +1.0 1,987 + PGA1_65p00020 0.44 +0.8 1,989 - PGA1_65p00020 0.44 -0.2 2,669 - +1.6 2,683 + +0.5 2,683 + -0.3 2,774 + +0.5 2,856 + -0.2 2,875 - +0.4 3,023 - PGA1_65p00030 0.14 +1.2 3,153 - PGA1_65p00030 0.21 +0.4 3,255 + PGA1_65p00030 0.27 +1.1 3,307 + PGA1_65p00030 0.30 +1.1 3,433 - PGA1_65p00030 0.37 +0.1 3,461 + PGA1_65p00030 0.39 +1.2 3,512 + PGA1_65p00030 0.42 +0.6 3,545 + PGA1_65p00030 0.44 +1.1 3,928 + PGA1_65p00030 0.65 +1.4 3,937 - PGA1_65p00030 0.66 +2.3 4,047 + PGA1_65p00030 0.72 +1.2 4,129 + PGA1_65p00030 0.77 +1.6 4,318 + PGA1_65p00030 0.87 +0.6 4,402 + -0.2 4,542 - +1.1 4,556 - +1.4 4,607 + +1.7 4,657 - -0.2 4,936 + +0.1 4,969 + PGA1_65p00040 0.11 +0.8 5,028 - PGA1_65p00040 0.13 +0.2 5,028 - +1.3 5,134 - PGA1_65p00040 0.17 +0.7 5,289 - +2.1 5,317 - PGA1_65p00040 0.24 -0.5 5,428 + PGA1_65p00040 0.29 +0.9 5,497 + PGA1_65p00040 0.32 +2.4
Or see this region's nucleotide sequence