Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0372 and Psest_0373 are separated by 28 nucleotides Psest_0373 and Psest_0374 are separated by 450 nucleotides
Psest_0372: Psest_0372 - Uncharacterized protein conserved in bacteria, at 398,239 to 399,219
_0372
Psest_0373: Psest_0373 - L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily, at 399,248 to 400,639
_0373
Psest_0374: Psest_0374 - 5-dehydro-4-deoxyglucarate dehydratase, at 401,090 to 402,001
_0374
Position (kb) 399
400
401 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 398.327 kb on + strand at 398.328 kb on - strand at 398.330 kb on + strand at 398.369 kb on + strand, within Psest_0372 at 398.456 kb on + strand, within Psest_0372 at 398.456 kb on + strand, within Psest_0372 at 398.457 kb on - strand, within Psest_0372 at 398.573 kb on + strand, within Psest_0372 at 398.573 kb on + strand, within Psest_0372 at 398.573 kb on + strand, within Psest_0372 at 398.573 kb on + strand, within Psest_0372 at 398.573 kb on + strand, within Psest_0372 at 398.573 kb on + strand, within Psest_0372 at 398.574 kb on - strand, within Psest_0372 at 398.574 kb on - strand, within Psest_0372 at 398.574 kb on - strand, within Psest_0372 at 398.574 kb on - strand, within Psest_0372 at 398.574 kb on - strand, within Psest_0372 at 398.591 kb on + strand, within Psest_0372 at 398.591 kb on + strand, within Psest_0372 at 398.591 kb on + strand, within Psest_0372 at 398.592 kb on - strand, within Psest_0372 at 398.592 kb on - strand, within Psest_0372 at 398.741 kb on + strand, within Psest_0372 at 398.741 kb on + strand, within Psest_0372 at 398.873 kb on + strand, within Psest_0372 at 398.873 kb on + strand, within Psest_0372 at 399.004 kb on - strand, within Psest_0372 at 399.044 kb on + strand, within Psest_0372 at 399.044 kb on + strand, within Psest_0372 at 399.044 kb on + strand, within Psest_0372 at 399.045 kb on - strand, within Psest_0372 at 399.045 kb on - strand, within Psest_0372 at 399.045 kb on - strand, within Psest_0372 at 399.208 kb on + strand at 399.208 kb on + strand at 399.208 kb on + strand at 399.208 kb on + strand at 399.254 kb on - strand at 399.254 kb on - strand at 399.285 kb on + strand at 399.285 kb on + strand at 399.286 kb on - strand at 399.286 kb on - strand at 399.286 kb on - strand at 399.286 kb on - strand at 399.286 kb on - strand at 399.286 kb on - strand at 399.354 kb on + strand at 399.354 kb on + strand at 399.354 kb on + strand at 399.354 kb on + strand at 399.354 kb on + strand at 399.354 kb on + strand at 399.354 kb on + strand at 399.789 kb on + strand, within Psest_0373 at 400.099 kb on - strand, within Psest_0373 at 400.099 kb on - strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.127 kb on + strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.128 kb on - strand, within Psest_0373 at 400.129 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.131 kb on + strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.132 kb on - strand, within Psest_0373 at 400.140 kb on + strand, within Psest_0373 at 400.398 kb on + strand, within Psest_0373 at 400.473 kb on - strand, within Psest_0373 at 400.533 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.607 kb on + strand at 400.608 kb on - strand at 400.608 kb on - strand at 400.608 kb on - strand at 400.608 kb on - strand at 400.608 kb on - strand at 400.608 kb on - strand at 400.608 kb on - strand at 400.608 kb on - strand at 400.864 kb on - strand at 400.898 kb on + strand at 400.899 kb on - strand at 400.899 kb on - strand at 400.906 kb on + strand at 400.907 kb on - strand at 401.056 kb on + strand at 401.187 kb on - strand, within Psest_0374 at 401.187 kb on - strand, within Psest_0374 at 401.188 kb on + strand, within Psest_0374 at 401.188 kb on + strand, within Psest_0374 at 401.189 kb on - strand, within Psest_0374 at 401.282 kb on + strand, within Psest_0374 at 401.430 kb on - strand, within Psest_0374 at 401.430 kb on - strand, within Psest_0374 at 401.510 kb on + strand, within Psest_0374 at 401.510 kb on + strand, within Psest_0374 at 401.510 kb on + strand, within Psest_0374 at 401.511 kb on - strand, within Psest_0374 at 401.511 kb on - strand, within Psest_0374 at 401.511 kb on - strand, within Psest_0374 at 401.511 kb on - strand, within Psest_0374
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 398,327 + -0.7 398,328 - +0.0 398,330 + -0.0 398,369 + Psest_0372 0.13 +1.6 398,456 + Psest_0372 0.22 +0.1 398,456 + Psest_0372 0.22 +0.6 398,457 - Psest_0372 0.22 -0.4 398,573 + Psest_0372 0.34 -0.5 398,573 + Psest_0372 0.34 +0.1 398,573 + Psest_0372 0.34 -0.3 398,573 + Psest_0372 0.34 +0.1 398,573 + Psest_0372 0.34 +0.1 398,573 + Psest_0372 0.34 +2.4 398,574 - Psest_0372 0.34 -0.3 398,574 - Psest_0372 0.34 -0.9 398,574 - Psest_0372 0.34 +0.0 398,574 - Psest_0372 0.34 +0.8 398,574 - Psest_0372 0.34 +0.1 398,591 + Psest_0372 0.36 -0.6 398,591 + Psest_0372 0.36 +0.6 398,591 + Psest_0372 0.36 +0.3 398,592 - Psest_0372 0.36 +1.3 398,592 - Psest_0372 0.36 +0.4 398,741 + Psest_0372 0.51 +1.6 398,741 + Psest_0372 0.51 -2.4 398,873 + Psest_0372 0.65 +0.1 398,873 + Psest_0372 0.65 -1.4 399,004 - Psest_0372 0.78 -1.8 399,044 + Psest_0372 0.82 +1.6 399,044 + Psest_0372 0.82 +0.3 399,044 + Psest_0372 0.82 +1.1 399,045 - Psest_0372 0.82 +0.3 399,045 - Psest_0372 0.82 +0.3 399,045 - Psest_0372 0.82 -0.4 399,208 + -1.6 399,208 + -0.1 399,208 + +0.6 399,208 + -0.4 399,254 - +0.9 399,254 - -1.0 399,285 + +1.6 399,285 + -0.2 399,286 - +0.6 399,286 - +0.9 399,286 - -0.6 399,286 - -0.7 399,286 - +0.4 399,286 - -0.9 399,354 + -0.7 399,354 + +1.6 399,354 + -0.4 399,354 + -0.4 399,354 + +0.3 399,354 + -2.5 399,354 + +0.1 399,789 + Psest_0373 0.39 -0.4 400,099 - Psest_0373 0.61 -0.4 400,099 - Psest_0373 0.61 -0.6 400,127 + Psest_0373 0.63 -0.4 400,127 + Psest_0373 0.63 +1.4 400,127 + Psest_0373 0.63 -0.5 400,127 + Psest_0373 0.63 -0.2 400,127 + Psest_0373 0.63 +1.6 400,127 + Psest_0373 0.63 +0.3 400,127 + Psest_0373 0.63 +1.6 400,127 + Psest_0373 0.63 -0.4 400,127 + Psest_0373 0.63 +0.6 400,127 + Psest_0373 0.63 +1.6 400,127 + Psest_0373 0.63 +0.1 400,127 + Psest_0373 0.63 -0.9 400,127 + Psest_0373 0.63 -0.2 400,127 + Psest_0373 0.63 +0.9 400,127 + Psest_0373 0.63 -0.0 400,128 - Psest_0373 0.63 -0.8 400,128 - Psest_0373 0.63 +0.6 400,128 - Psest_0373 0.63 +2.6 400,128 - Psest_0373 0.63 +0.6 400,128 - Psest_0373 0.63 -1.2 400,128 - Psest_0373 0.63 +0.1 400,128 - Psest_0373 0.63 +0.9 400,128 - Psest_0373 0.63 +0.6 400,128 - Psest_0373 0.63 -0.7 400,128 - Psest_0373 0.63 -1.2 400,128 - Psest_0373 0.63 -1.3 400,128 - Psest_0373 0.63 -0.9 400,128 - Psest_0373 0.63 +0.3 400,128 - Psest_0373 0.63 +0.1 400,128 - Psest_0373 0.63 -0.2 400,128 - Psest_0373 0.63 -0.4 400,128 - Psest_0373 0.63 +0.3 400,128 - Psest_0373 0.63 -0.4 400,128 - Psest_0373 0.63 -0.2 400,128 - Psest_0373 0.63 +1.6 400,128 - Psest_0373 0.63 -1.9 400,128 - Psest_0373 0.63 +0.6 400,128 - Psest_0373 0.63 +0.1 400,128 - Psest_0373 0.63 +0.2 400,128 - Psest_0373 0.63 -0.5 400,128 - Psest_0373 0.63 -2.5 400,128 - Psest_0373 0.63 +2.2 400,128 - Psest_0373 0.63 +0.2 400,128 - Psest_0373 0.63 -0.2 400,128 - Psest_0373 0.63 -1.5 400,128 - Psest_0373 0.63 +0.1 400,128 - Psest_0373 0.63 +0.6 400,128 - Psest_0373 0.63 -2.8 400,129 + Psest_0373 0.63 -0.3 400,131 + Psest_0373 0.63 -0.1 400,131 + Psest_0373 0.63 -0.3 400,131 + Psest_0373 0.63 -0.3 400,131 + Psest_0373 0.63 +0.6 400,131 + Psest_0373 0.63 +0.1 400,131 + Psest_0373 0.63 +1.6 400,131 + Psest_0373 0.63 -0.5 400,131 + Psest_0373 0.63 -0.0 400,131 + Psest_0373 0.63 -0.5 400,131 + Psest_0373 0.63 -0.0 400,131 + Psest_0373 0.63 +1.4 400,131 + Psest_0373 0.63 +0.1 400,131 + Psest_0373 0.63 +1.6 400,131 + Psest_0373 0.63 -1.5 400,131 + Psest_0373 0.63 -0.4 400,131 + Psest_0373 0.63 +0.1 400,131 + Psest_0373 0.63 +0.6 400,131 + Psest_0373 0.63 -1.9 400,131 + Psest_0373 0.63 -0.7 400,131 + Psest_0373 0.63 -0.8 400,131 + Psest_0373 0.63 +0.3 400,131 + Psest_0373 0.63 -0.9 400,131 + Psest_0373 0.63 +0.1 400,131 + Psest_0373 0.63 -1.1 400,131 + Psest_0373 0.63 +0.9 400,131 + Psest_0373 0.63 +1.6 400,131 + Psest_0373 0.63 -0.9 400,131 + Psest_0373 0.63 -1.7 400,132 - Psest_0373 0.64 -0.2 400,132 - Psest_0373 0.64 +0.1 400,132 - Psest_0373 0.64 -1.1 400,132 - Psest_0373 0.64 -1.2 400,132 - Psest_0373 0.64 +1.2 400,132 - Psest_0373 0.64 -1.4 400,132 - Psest_0373 0.64 -1.9 400,132 - Psest_0373 0.64 -0.2 400,132 - Psest_0373 0.64 +0.1 400,132 - Psest_0373 0.64 +0.3 400,132 - Psest_0373 0.64 +0.9 400,132 - Psest_0373 0.64 +0.6 400,132 - Psest_0373 0.64 +1.1 400,132 - Psest_0373 0.64 -0.9 400,132 - Psest_0373 0.64 -1.2 400,132 - Psest_0373 0.64 +1.2 400,132 - Psest_0373 0.64 -1.4 400,132 - Psest_0373 0.64 -1.5 400,132 - Psest_0373 0.64 +0.9 400,132 - Psest_0373 0.64 -0.9 400,132 - Psest_0373 0.64 +2.2 400,132 - Psest_0373 0.64 -1.4 400,132 - Psest_0373 0.64 -0.9 400,132 - Psest_0373 0.64 +0.2 400,132 - Psest_0373 0.64 +1.2 400,132 - Psest_0373 0.64 -0.4 400,132 - Psest_0373 0.64 -0.5 400,132 - Psest_0373 0.64 +1.2 400,132 - Psest_0373 0.64 +0.6 400,132 - Psest_0373 0.64 -0.2 400,132 - Psest_0373 0.64 +0.1 400,132 - Psest_0373 0.64 -0.7 400,132 - Psest_0373 0.64 -0.4 400,140 + Psest_0373 0.64 -0.4 400,398 + Psest_0373 0.83 -1.9 400,473 - Psest_0373 0.88 -1.9 400,533 + +0.6 400,607 + +1.2 400,607 + -1.0 400,607 + +0.1 400,607 + +2.6 400,607 + +0.3 400,607 + -0.7 400,607 + -0.9 400,607 + +0.9 400,607 + +0.1 400,607 + -1.0 400,607 + +0.4 400,607 + -0.7 400,608 - -1.2 400,608 - -0.9 400,608 - +1.6 400,608 - -0.1 400,608 - -0.9 400,608 - +0.6 400,608 - -0.2 400,608 - -0.8 400,864 - -1.7 400,898 + -0.5 400,899 - +0.3 400,899 - -0.8 400,906 + +0.1 400,907 - -0.3 401,056 + -0.5 401,187 - Psest_0374 0.11 +1.6 401,187 - Psest_0374 0.11 -1.2 401,188 + Psest_0374 0.11 +0.6 401,188 + Psest_0374 0.11 -1.2 401,189 - Psest_0374 0.11 -1.0 401,282 + Psest_0374 0.21 +0.9 401,430 - Psest_0374 0.37 -1.7 401,430 - Psest_0374 0.37 +0.6 401,510 + Psest_0374 0.46 +1.6 401,510 + Psest_0374 0.46 +1.2 401,510 + Psest_0374 0.46 -1.6 401,511 - Psest_0374 0.46 +0.2 401,511 - Psest_0374 0.46 -0.9 401,511 - Psest_0374 0.46 +0.6 401,511 - Psest_0374 0.46 +1.2
Or see this region's nucleotide sequence