Strain Fitness in Marinobacter adhaerens HP15 around HP15_2598

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2597 and HP15_2598 are separated by 18 nucleotidesHP15_2598 and HP15_2599 are separated by 1 nucleotides HP15_2597: HP15_2597 - two component, sigma54 specific, transcriptional regulator, Fis family, at 2,745,000 to 2,746,904 _2597 HP15_2598: HP15_2598 - isopropylmalate isomerase small subunit, at 2,746,923 to 2,747,558 _2598 HP15_2599: HP15_2599 - isopropylmalate isomerase large subunit, at 2,747,560 to 2,748,969 _2599 Position (kb) 2746 2747 2748Strain fitness (log2 ratio) -1 0 1 2at 2745.933 kb on - strand, within HP15_2597at 2746.000 kb on + strand, within HP15_2597at 2746.085 kb on - strand, within HP15_2597at 2746.087 kb on - strand, within HP15_2597at 2746.092 kb on - strand, within HP15_2597at 2746.227 kb on + strand, within HP15_2597at 2746.227 kb on + strand, within HP15_2597at 2746.286 kb on + strand, within HP15_2597at 2746.307 kb on - strand, within HP15_2597at 2746.442 kb on + strand, within HP15_2597at 2746.477 kb on + strand, within HP15_2597at 2746.549 kb on + strand, within HP15_2597at 2746.552 kb on - strand, within HP15_2597at 2746.552 kb on - strand, within HP15_2597at 2746.557 kb on + strand, within HP15_2597at 2746.565 kb on + strand, within HP15_2597at 2746.573 kb on - strand, within HP15_2597at 2746.644 kb on + strand, within HP15_2597at 2746.729 kb on + strandat 2746.752 kb on + strandat 2746.758 kb on - strandat 2746.849 kb on - strandat 2746.940 kb on + strandat 2746.963 kb on + strandat 2747.005 kb on + strand, within HP15_2598at 2747.111 kb on + strand, within HP15_2598at 2747.111 kb on + strand, within HP15_2598at 2747.111 kb on + strand, within HP15_2598at 2747.119 kb on - strand, within HP15_2598at 2747.311 kb on - strand, within HP15_2598at 2747.334 kb on + strand, within HP15_2598at 2747.334 kb on + strand, within HP15_2598at 2747.342 kb on - strand, within HP15_2598at 2747.389 kb on + strand, within HP15_2598at 2747.449 kb on - strand, within HP15_2598at 2747.489 kb on - strand, within HP15_2598at 2747.494 kb on - strand, within HP15_2598at 2747.499 kb on + strandat 2747.521 kb on + strandat 2747.552 kb on + strandat 2747.642 kb on + strandat 2747.642 kb on + strandat 2747.650 kb on - strandat 2747.699 kb on + strandat 2747.707 kb on - strand, within HP15_2599at 2747.834 kb on + strand, within HP15_2599at 2747.956 kb on + strand, within HP15_2599at 2747.989 kb on + strand, within HP15_2599at 2747.997 kb on - strand, within HP15_2599at 2748.192 kb on - strand, within HP15_2599at 2748.211 kb on + strand, within HP15_2599at 2748.225 kb on - strand, within HP15_2599at 2748.231 kb on - strand, within HP15_2599at 2748.327 kb on + strand, within HP15_2599at 2748.327 kb on + strand, within HP15_2599at 2748.427 kb on + strand, within HP15_2599at 2748.451 kb on - strand, within HP15_2599at 2748.471 kb on + strand, within HP15_2599

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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2,745,933 - HP15_2597 0.49 +0.1
2,746,000 + HP15_2597 0.52 -0.8
2,746,085 - HP15_2597 0.57 +0.1
2,746,087 - HP15_2597 0.57 -0.4
2,746,092 - HP15_2597 0.57 +0.7
2,746,227 + HP15_2597 0.64 +0.8
2,746,227 + HP15_2597 0.64 -0.2
2,746,286 + HP15_2597 0.68 +0.4
2,746,307 - HP15_2597 0.69 +0.3
2,746,442 + HP15_2597 0.76 +0.1
2,746,477 + HP15_2597 0.78 +1.9
2,746,549 + HP15_2597 0.81 -0.0
2,746,552 - HP15_2597 0.81 -0.2
2,746,552 - HP15_2597 0.81 +0.8
2,746,557 + HP15_2597 0.82 +0.8
2,746,565 + HP15_2597 0.82 +1.3
2,746,573 - HP15_2597 0.83 +0.1
2,746,644 + HP15_2597 0.86 +0.2
2,746,729 + +0.5
2,746,752 + +0.0
2,746,758 - -0.7
2,746,849 - -0.2
2,746,940 + -0.4
2,746,963 + -0.6
2,747,005 + HP15_2598 0.13 +0.7
2,747,111 + HP15_2598 0.30 -0.1
2,747,111 + HP15_2598 0.30 -0.9
2,747,111 + HP15_2598 0.30 -0.5
2,747,119 - HP15_2598 0.31 +0.5
2,747,311 - HP15_2598 0.61 -0.4
2,747,334 + HP15_2598 0.65 -0.6
2,747,334 + HP15_2598 0.65 +0.3
2,747,342 - HP15_2598 0.66 -1.1
2,747,389 + HP15_2598 0.73 +1.1
2,747,449 - HP15_2598 0.83 +0.2
2,747,489 - HP15_2598 0.89 -0.7
2,747,494 - HP15_2598 0.90 +0.7
2,747,499 + +0.0
2,747,521 + +0.0
2,747,552 + +1.0
2,747,642 + -0.7
2,747,642 + +0.4
2,747,650 - +0.1
2,747,699 + -0.1
2,747,707 - HP15_2599 0.10 -0.3
2,747,834 + HP15_2599 0.19 -0.5
2,747,956 + HP15_2599 0.28 +0.0
2,747,989 + HP15_2599 0.30 +1.1
2,747,997 - HP15_2599 0.31 +0.5
2,748,192 - HP15_2599 0.45 -0.3
2,748,211 + HP15_2599 0.46 -0.1
2,748,225 - HP15_2599 0.47 +1.1
2,748,231 - HP15_2599 0.48 +0.1
2,748,327 + HP15_2599 0.54 +0.1
2,748,327 + HP15_2599 0.54 -0.4
2,748,427 + HP15_2599 0.61 -0.5
2,748,451 - HP15_2599 0.63 +0.2
2,748,471 + HP15_2599 0.65 +0.6

Or see this region's nucleotide sequence