Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02560 and PGA1_c02570 overlap by 14 nucleotides PGA1_c02570 and PGA1_c02580 are separated by 86 nucleotides PGA1_c02580 and PGA1_c02590 are separated by 237 nucleotides
PGA1_c02560: PGA1_c02560 - protocatechuate 3,4-dioxygenase beta chain, at 240,775 to 241,500
_c02560
PGA1_c02570: PGA1_c02570 - putative 4-carboxymuconolactone decarboxylase PcaC, at 241,487 to 241,912
_c02570
PGA1_c02580: PGA1_c02580 - putative HTH-type transcriptional regulator pcaQ, at 241,999 to 242,916
_c02580
PGA1_c02590: PGA1_c02590 - putative high-affinity branched-chain amino acid transport system permease protein LivH, at 243,154 to 244,029
_c02590
Position (kb) 241
242
243 Strain fitness (log2 ratio) -2
-1
0
1
2 at 241.036 kb on - strand, within PGA1_c02560 at 241.042 kb on + strand, within PGA1_c02560 at 241.061 kb on + strand, within PGA1_c02560 at 241.061 kb on + strand, within PGA1_c02560 at 241.061 kb on + strand, within PGA1_c02560 at 241.067 kb on + strand, within PGA1_c02560 at 241.067 kb on + strand, within PGA1_c02560 at 241.069 kb on - strand, within PGA1_c02560 at 241.069 kb on - strand, within PGA1_c02560 at 241.069 kb on - strand, within PGA1_c02560 at 241.069 kb on - strand, within PGA1_c02560 at 241.069 kb on - strand, within PGA1_c02560 at 241.075 kb on - strand, within PGA1_c02560 at 241.082 kb on - strand, within PGA1_c02560 at 241.082 kb on - strand, within PGA1_c02560 at 241.112 kb on + strand, within PGA1_c02560 at 241.112 kb on + strand, within PGA1_c02560 at 241.119 kb on + strand, within PGA1_c02560 at 241.143 kb on + strand, within PGA1_c02560 at 241.227 kb on + strand, within PGA1_c02560 at 241.230 kb on - strand, within PGA1_c02560 at 241.240 kb on - strand, within PGA1_c02560 at 241.340 kb on + strand, within PGA1_c02560 at 241.348 kb on - strand, within PGA1_c02560 at 241.362 kb on + strand, within PGA1_c02560 at 241.365 kb on - strand, within PGA1_c02560 at 241.382 kb on + strand, within PGA1_c02560 at 241.386 kb on + strand, within PGA1_c02560 at 241.386 kb on + strand, within PGA1_c02560 at 241.399 kb on - strand, within PGA1_c02560 at 241.419 kb on + strand, within PGA1_c02560 at 241.503 kb on - strand at 241.518 kb on - strand at 241.597 kb on + strand, within PGA1_c02570 at 241.601 kb on + strand, within PGA1_c02570 at 241.605 kb on - strand, within PGA1_c02570 at 241.618 kb on + strand, within PGA1_c02570 at 241.645 kb on - strand, within PGA1_c02570 at 241.647 kb on - strand, within PGA1_c02570 at 241.658 kb on + strand, within PGA1_c02570 at 241.676 kb on - strand, within PGA1_c02570 at 241.746 kb on + strand, within PGA1_c02570 at 241.746 kb on + strand, within PGA1_c02570 at 241.824 kb on + strand, within PGA1_c02570 at 241.834 kb on + strand, within PGA1_c02570 at 241.865 kb on - strand, within PGA1_c02570 at 241.868 kb on - strand, within PGA1_c02570 at 241.880 kb on + strand at 241.880 kb on + strand at 241.880 kb on + strand at 241.880 kb on + strand at 241.880 kb on + strand at 241.880 kb on + strand at 241.880 kb on + strand at 241.880 kb on + strand at 241.888 kb on - strand at 241.888 kb on - strand at 241.888 kb on - strand at 241.890 kb on + strand at 241.890 kb on + strand at 241.898 kb on - strand at 241.898 kb on - strand at 241.898 kb on - strand at 241.898 kb on - strand at 241.898 kb on - strand at 241.898 kb on - strand at 241.898 kb on - strand at 241.898 kb on - strand at 241.898 kb on - strand at 241.958 kb on + strand at 241.966 kb on - strand at 241.966 kb on - strand at 241.966 kb on - strand at 242.030 kb on + strand at 242.099 kb on - strand, within PGA1_c02580 at 242.100 kb on - strand, within PGA1_c02580 at 242.177 kb on + strand, within PGA1_c02580 at 242.185 kb on - strand, within PGA1_c02580 at 242.205 kb on - strand, within PGA1_c02580 at 242.236 kb on - strand, within PGA1_c02580 at 242.285 kb on + strand, within PGA1_c02580 at 242.351 kb on + strand, within PGA1_c02580 at 242.351 kb on + strand, within PGA1_c02580 at 242.429 kb on + strand, within PGA1_c02580 at 242.434 kb on + strand, within PGA1_c02580 at 242.442 kb on - strand, within PGA1_c02580 at 242.513 kb on + strand, within PGA1_c02580 at 242.519 kb on + strand, within PGA1_c02580 at 242.651 kb on + strand, within PGA1_c02580 at 242.718 kb on + strand, within PGA1_c02580 at 242.761 kb on - strand, within PGA1_c02580 at 242.764 kb on + strand, within PGA1_c02580 at 242.830 kb on - strand at 242.852 kb on + strand at 242.854 kb on + strand at 242.865 kb on + strand at 242.924 kb on + strand at 242.924 kb on + strand at 242.953 kb on + strand at 243.024 kb on + strand at 243.040 kb on + strand at 243.055 kb on + strand at 243.062 kb on - strand at 243.064 kb on + strand at 243.067 kb on - strand at 243.067 kb on - strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.097 kb on + strand at 243.105 kb on - strand at 243.150 kb on - strand at 243.161 kb on + strand at 243.169 kb on - strand at 243.182 kb on - strand at 243.221 kb on + strand at 243.221 kb on + strand at 243.226 kb on + strand at 243.226 kb on + strand at 243.229 kb on - strand at 243.282 kb on + strand, within PGA1_c02590 at 243.298 kb on - strand, within PGA1_c02590 at 243.299 kb on + strand, within PGA1_c02590 at 243.307 kb on - strand, within PGA1_c02590 at 243.377 kb on + strand, within PGA1_c02590 at 243.397 kb on + strand, within PGA1_c02590 at 243.453 kb on - strand, within PGA1_c02590 at 243.453 kb on - strand, within PGA1_c02590 at 243.508 kb on - strand, within PGA1_c02590 at 243.604 kb on + strand, within PGA1_c02590 at 243.686 kb on - strand, within PGA1_c02590 at 243.715 kb on + strand, within PGA1_c02590 at 243.724 kb on + strand, within PGA1_c02590 at 243.724 kb on + strand, within PGA1_c02590 at 243.813 kb on + strand, within PGA1_c02590 at 243.819 kb on + strand, within PGA1_c02590 at 243.826 kb on + strand, within PGA1_c02590 at 243.849 kb on - strand, within PGA1_c02590 at 243.864 kb on + strand, within PGA1_c02590 at 243.901 kb on + strand, within PGA1_c02590
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 241,036 - PGA1_c02560 0.36 -0.0 241,042 + PGA1_c02560 0.37 -0.3 241,061 + PGA1_c02560 0.39 -1.3 241,061 + PGA1_c02560 0.39 -0.5 241,061 + PGA1_c02560 0.39 +0.0 241,067 + PGA1_c02560 0.40 -0.3 241,067 + PGA1_c02560 0.40 -1.3 241,069 - PGA1_c02560 0.40 -0.5 241,069 - PGA1_c02560 0.40 -0.7 241,069 - PGA1_c02560 0.40 +0.1 241,069 - PGA1_c02560 0.40 +1.3 241,069 - PGA1_c02560 0.40 -0.6 241,075 - PGA1_c02560 0.41 -0.3 241,082 - PGA1_c02560 0.42 -0.2 241,082 - PGA1_c02560 0.42 -0.5 241,112 + PGA1_c02560 0.46 +0.4 241,112 + PGA1_c02560 0.46 -0.7 241,119 + PGA1_c02560 0.47 -0.3 241,143 + PGA1_c02560 0.51 -0.4 241,227 + PGA1_c02560 0.62 +0.4 241,230 - PGA1_c02560 0.63 +0.2 241,240 - PGA1_c02560 0.64 -0.0 241,340 + PGA1_c02560 0.78 +0.4 241,348 - PGA1_c02560 0.79 -0.6 241,362 + PGA1_c02560 0.81 +0.7 241,365 - PGA1_c02560 0.81 -1.5 241,382 + PGA1_c02560 0.84 +0.2 241,386 + PGA1_c02560 0.84 +0.4 241,386 + PGA1_c02560 0.84 +0.1 241,399 - PGA1_c02560 0.86 -0.4 241,419 + PGA1_c02560 0.89 +0.4 241,503 - -0.2 241,518 - -0.3 241,597 + PGA1_c02570 0.26 +1.0 241,601 + PGA1_c02570 0.27 -0.7 241,605 - PGA1_c02570 0.28 +0.6 241,618 + PGA1_c02570 0.31 +0.4 241,645 - PGA1_c02570 0.37 +0.7 241,647 - PGA1_c02570 0.38 +0.2 241,658 + PGA1_c02570 0.40 +0.5 241,676 - PGA1_c02570 0.44 -0.6 241,746 + PGA1_c02570 0.61 -0.4 241,746 + PGA1_c02570 0.61 +0.7 241,824 + PGA1_c02570 0.79 +1.3 241,834 + PGA1_c02570 0.81 +0.3 241,865 - PGA1_c02570 0.89 +1.3 241,868 - PGA1_c02570 0.89 +0.7 241,880 + -0.7 241,880 + +0.4 241,880 + +0.7 241,880 + +0.2 241,880 + -0.1 241,880 + -0.5 241,880 + +1.2 241,880 + -0.4 241,888 - +1.8 241,888 - -0.6 241,888 - +0.1 241,890 + +0.0 241,890 + +0.8 241,898 - +0.0 241,898 - -0.0 241,898 - +0.0 241,898 - +1.4 241,898 - -0.3 241,898 - +0.2 241,898 - +0.6 241,898 - +0.0 241,898 - -0.4 241,958 + +1.9 241,966 - -0.5 241,966 - +0.4 241,966 - +0.5 242,030 + +0.8 242,099 - PGA1_c02580 0.11 +1.3 242,100 - PGA1_c02580 0.11 +0.2 242,177 + PGA1_c02580 0.19 -0.0 242,185 - PGA1_c02580 0.20 -0.9 242,205 - PGA1_c02580 0.22 -0.5 242,236 - PGA1_c02580 0.26 +0.1 242,285 + PGA1_c02580 0.31 +0.0 242,351 + PGA1_c02580 0.38 +0.1 242,351 + PGA1_c02580 0.38 -0.0 242,429 + PGA1_c02580 0.47 +1.6 242,434 + PGA1_c02580 0.47 +0.2 242,442 - PGA1_c02580 0.48 -1.1 242,513 + PGA1_c02580 0.56 +0.6 242,519 + PGA1_c02580 0.57 -0.1 242,651 + PGA1_c02580 0.71 +0.5 242,718 + PGA1_c02580 0.78 -1.6 242,761 - PGA1_c02580 0.83 +0.7 242,764 + PGA1_c02580 0.83 -0.1 242,830 - +0.1 242,852 + +0.4 242,854 + -0.0 242,865 + +0.2 242,924 + +0.5 242,924 + +1.2 242,953 + +0.6 243,024 + +0.1 243,040 + -0.0 243,055 + +1.1 243,062 - -0.2 243,064 + -1.2 243,067 - -0.4 243,067 - -1.4 243,087 + +1.2 243,087 + +0.3 243,087 + +0.8 243,087 + -0.5 243,087 + +0.5 243,087 + -0.5 243,087 + +0.6 243,087 + +0.8 243,087 + +1.0 243,087 + +0.4 243,087 + +0.2 243,087 + +0.8 243,087 + +0.5 243,087 + -1.0 243,087 + -0.4 243,087 + -0.0 243,087 + -0.3 243,087 + -1.3 243,087 + +1.4 243,087 + -0.3 243,087 + +0.1 243,087 + +0.7 243,087 + +0.5 243,087 + +0.3 243,087 + +1.0 243,087 + -0.5 243,087 + -2.6 243,087 + -0.2 243,087 + +0.9 243,087 + +0.5 243,087 + +0.7 243,087 + +0.7 243,087 + -0.1 243,087 + -0.1 243,095 - -0.1 243,095 - -0.2 243,095 - +0.6 243,095 - +0.6 243,095 - +0.9 243,095 - -0.9 243,095 - +1.0 243,095 - +0.1 243,095 - +0.4 243,095 - -1.5 243,095 - -0.7 243,095 - +0.6 243,095 - -0.1 243,095 - +1.5 243,095 - +0.3 243,097 + -0.0 243,105 - +0.7 243,150 - -0.2 243,161 + +0.4 243,169 - +0.1 243,182 - +0.9 243,221 + +1.0 243,221 + -0.9 243,226 + -0.1 243,226 + +0.6 243,229 - +0.6 243,282 + PGA1_c02590 0.15 +0.7 243,298 - PGA1_c02590 0.16 +0.4 243,299 + PGA1_c02590 0.17 -0.2 243,307 - PGA1_c02590 0.17 +0.1 243,377 + PGA1_c02590 0.25 -1.3 243,397 + PGA1_c02590 0.28 +1.1 243,453 - PGA1_c02590 0.34 +0.4 243,453 - PGA1_c02590 0.34 +0.2 243,508 - PGA1_c02590 0.40 +0.5 243,604 + PGA1_c02590 0.51 -0.6 243,686 - PGA1_c02590 0.61 +0.4 243,715 + PGA1_c02590 0.64 +0.5 243,724 + PGA1_c02590 0.65 +0.1 243,724 + PGA1_c02590 0.65 +0.9 243,813 + PGA1_c02590 0.75 +0.6 243,819 + PGA1_c02590 0.76 +2.0 243,826 + PGA1_c02590 0.77 -0.1 243,849 - PGA1_c02590 0.79 +0.5 243,864 + PGA1_c02590 0.81 +1.3 243,901 + PGA1_c02590 0.85 -0.4
Or see this region's nucleotide sequence