Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1893 and Psest_1894 are separated by 56 nucleotides Psest_1894 and Psest_1895 overlap by 17 nucleotides Psest_1895 and Psest_1896 are separated by 158 nucleotides
Psest_1893: Psest_1893 - glucokinase, proteobacterial type, at 2,002,586 to 2,003,548
_1893
Psest_1894: Psest_1894 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 2,003,605 to 2,004,339
_1894
Psest_1895: Psest_1895 - Signal transduction histidine kinase, at 2,004,323 to 2,005,774
_1895
Psest_1896: Psest_1896 - ABC-type sugar transport system, periplasmic component, at 2,005,933 to 2,007,180
_1896
Position (kb)
2004
2005
2006 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2003.360 kb on + strand, within Psest_1893 at 2003.361 kb on - strand, within Psest_1893 at 2003.472 kb on + strand at 2003.547 kb on - strand at 2003.547 kb on - strand at 2003.619 kb on + strand at 2003.620 kb on - strand at 2003.620 kb on - strand at 2003.620 kb on - strand at 2003.620 kb on - strand at 2003.620 kb on - strand at 2003.674 kb on + strand at 2003.675 kb on - strand at 2004.527 kb on + strand, within Psest_1895 at 2004.528 kb on - strand, within Psest_1895 at 2004.528 kb on - strand, within Psest_1895 at 2004.672 kb on + strand, within Psest_1895 at 2004.673 kb on - strand, within Psest_1895 at 2004.673 kb on - strand, within Psest_1895 at 2004.673 kb on - strand, within Psest_1895 at 2004.673 kb on - strand, within Psest_1895 at 2004.673 kb on - strand, within Psest_1895 at 2004.885 kb on - strand, within Psest_1895 at 2004.885 kb on - strand, within Psest_1895 at 2004.911 kb on + strand, within Psest_1895 at 2004.911 kb on + strand, within Psest_1895 at 2004.999 kb on + strand, within Psest_1895 at 2005.477 kb on + strand, within Psest_1895 at 2005.517 kb on + strand, within Psest_1895 at 2005.517 kb on + strand, within Psest_1895 at 2005.795 kb on + strand at 2005.807 kb on - strand at 2005.807 kb on - strand at 2005.873 kb on - strand at 2005.873 kb on - strand at 2006.317 kb on + strand, within Psest_1896 at 2006.317 kb on + strand, within Psest_1896 at 2006.317 kb on + strand, within Psest_1896 at 2006.318 kb on - strand, within Psest_1896 at 2006.318 kb on - strand, within Psest_1896 at 2006.517 kb on - strand, within Psest_1896 at 2006.633 kb on - strand, within Psest_1896 at 2006.633 kb on - strand, within Psest_1896 at 2006.633 kb on - strand, within Psest_1896 at 2006.771 kb on - strand, within Psest_1896
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,003,360 + Psest_1893 0.80 -2.9 2,003,361 - Psest_1893 0.80 +0.8 2,003,472 + +1.8 2,003,547 - -0.3 2,003,547 - -1.3 2,003,619 + -0.2 2,003,620 - +0.8 2,003,620 - +2.0 2,003,620 - -1.2 2,003,620 - +0.5 2,003,620 - +0.1 2,003,674 + -0.6 2,003,675 - +0.5 2,004,527 + Psest_1895 0.14 +1.4 2,004,528 - Psest_1895 0.14 -1.0 2,004,528 - Psest_1895 0.14 -0.2 2,004,672 + Psest_1895 0.24 -0.0 2,004,673 - Psest_1895 0.24 -0.6 2,004,673 - Psest_1895 0.24 -0.2 2,004,673 - Psest_1895 0.24 -1.1 2,004,673 - Psest_1895 0.24 -0.9 2,004,673 - Psest_1895 0.24 -1.5 2,004,885 - Psest_1895 0.39 -0.9 2,004,885 - Psest_1895 0.39 -1.8 2,004,911 + Psest_1895 0.40 -0.5 2,004,911 + Psest_1895 0.40 -2.3 2,004,999 + Psest_1895 0.47 -0.4 2,005,477 + Psest_1895 0.79 -0.7 2,005,517 + Psest_1895 0.82 -0.3 2,005,517 + Psest_1895 0.82 -1.2 2,005,795 + +1.4 2,005,807 - -0.0 2,005,807 - -0.5 2,005,873 - +0.8 2,005,873 - +0.1 2,006,317 + Psest_1896 0.31 +0.3 2,006,317 + Psest_1896 0.31 -1.2 2,006,317 + Psest_1896 0.31 +0.4 2,006,318 - Psest_1896 0.31 +0.2 2,006,318 - Psest_1896 0.31 -0.7 2,006,517 - Psest_1896 0.47 -1.4 2,006,633 - Psest_1896 0.56 -0.7 2,006,633 - Psest_1896 0.56 -0.0 2,006,633 - Psest_1896 0.56 +1.1 2,006,771 - Psest_1896 0.67 -0.8
Or see this region's nucleotide sequence