Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1633

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1631 and Psest_1632 are separated by 0 nucleotidesPsest_1632 and Psest_1633 are separated by 179 nucleotidesPsest_1633 and Psest_1634 are separated by 103 nucleotides Psest_1631: Psest_1631 - Uncharacterized conserved small protein, at 1,732,368 to 1,732,604 _1631 Psest_1632: Psest_1632 - Predicted permeases, at 1,732,605 to 1,733,360 _1632 Psest_1633: Psest_1633 - Protein of unknown function (DUF3365)., at 1,733,540 to 1,734,097 _1633 Psest_1634: Psest_1634 - tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain, at 1,734,201 to 1,736,183 _1634 Position (kb) 1733 1734 1735Strain fitness (log2 ratio) -1 0 1 2at 1732.699 kb on + strand, within Psest_1632at 1732.700 kb on - strand, within Psest_1632at 1732.700 kb on - strand, within Psest_1632at 1732.700 kb on - strand, within Psest_1632at 1732.792 kb on + strand, within Psest_1632at 1732.793 kb on - strand, within Psest_1632at 1732.793 kb on - strand, within Psest_1632at 1733.352 kb on + strandat 1733.352 kb on + strandat 1733.352 kb on + strandat 1733.353 kb on - strandat 1733.353 kb on - strandat 1733.353 kb on - strandat 1733.353 kb on - strandat 1733.353 kb on - strandat 1733.353 kb on - strandat 1733.353 kb on - strandat 1733.353 kb on - strandat 1733.461 kb on + strandat 1733.461 kb on + strandat 1733.461 kb on + strandat 1733.462 kb on - strandat 1733.462 kb on - strandat 1733.462 kb on - strandat 1733.511 kb on + strandat 1733.639 kb on + strand, within Psest_1633at 1733.639 kb on + strand, within Psest_1633at 1733.639 kb on + strand, within Psest_1633at 1733.639 kb on + strand, within Psest_1633at 1733.640 kb on - strand, within Psest_1633at 1733.642 kb on + strand, within Psest_1633at 1733.642 kb on + strand, within Psest_1633at 1733.642 kb on + strand, within Psest_1633at 1733.642 kb on + strand, within Psest_1633at 1733.642 kb on + strand, within Psest_1633at 1733.642 kb on + strand, within Psest_1633at 1733.642 kb on + strand, within Psest_1633at 1733.643 kb on - strand, within Psest_1633at 1733.643 kb on - strand, within Psest_1633at 1733.643 kb on - strand, within Psest_1633at 1733.709 kb on + strand, within Psest_1633at 1733.710 kb on - strand, within Psest_1633at 1734.056 kb on + strandat 1734.109 kb on + strandat 1734.110 kb on - strandat 1734.206 kb on + strandat 1734.365 kb on - strandat 1734.431 kb on - strand, within Psest_1634at 1734.431 kb on - strand, within Psest_1634at 1734.481 kb on + strand, within Psest_1634at 1734.560 kb on - strand, within Psest_1634at 1734.691 kb on + strand, within Psest_1634at 1734.691 kb on + strand, within Psest_1634

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,732,699 + Psest_1632 0.12 +0.2
1,732,700 - Psest_1632 0.13 +0.5
1,732,700 - Psest_1632 0.13 -0.1
1,732,700 - Psest_1632 0.13 +0.3
1,732,792 + Psest_1632 0.25 -1.2
1,732,793 - Psest_1632 0.25 +0.0
1,732,793 - Psest_1632 0.25 -0.8
1,733,352 + -0.8
1,733,352 + -0.1
1,733,352 + +1.5
1,733,353 - +0.0
1,733,353 - +1.5
1,733,353 - +1.5
1,733,353 - -0.6
1,733,353 - +1.2
1,733,353 - +1.5
1,733,353 - +0.5
1,733,353 - +0.5
1,733,461 + +2.5
1,733,461 + -0.1
1,733,461 + +0.5
1,733,462 - -0.1
1,733,462 - +0.5
1,733,462 - +1.1
1,733,511 + +1.2
1,733,639 + Psest_1633 0.18 -0.5
1,733,639 + Psest_1633 0.18 -0.5
1,733,639 + Psest_1633 0.18 +0.9
1,733,639 + Psest_1633 0.18 -0.8
1,733,640 - Psest_1633 0.18 +0.1
1,733,642 + Psest_1633 0.18 +1.5
1,733,642 + Psest_1633 0.18 -0.5
1,733,642 + Psest_1633 0.18 +0.3
1,733,642 + Psest_1633 0.18 -1.1
1,733,642 + Psest_1633 0.18 +0.2
1,733,642 + Psest_1633 0.18 +1.5
1,733,642 + Psest_1633 0.18 -0.5
1,733,643 - Psest_1633 0.18 -1.3
1,733,643 - Psest_1633 0.18 -1.1
1,733,643 - Psest_1633 0.18 -0.7
1,733,709 + Psest_1633 0.30 +1.5
1,733,710 - Psest_1633 0.30 +1.5
1,734,056 + -0.8
1,734,109 + +0.5
1,734,110 - -0.4
1,734,206 + +0.9
1,734,365 - -0.2
1,734,431 - Psest_1634 0.12 -1.3
1,734,431 - Psest_1634 0.12 +0.2
1,734,481 + Psest_1634 0.14 +1.5
1,734,560 - Psest_1634 0.18 +1.5
1,734,691 + Psest_1634 0.25 +1.5
1,734,691 + Psest_1634 0.25 +2.5

Or see this region's nucleotide sequence