Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1631 and Psest_1632 are separated by 0 nucleotides Psest_1632 and Psest_1633 are separated by 179 nucleotides Psest_1633 and Psest_1634 are separated by 103 nucleotides
Psest_1631: Psest_1631 - Uncharacterized conserved small protein, at 1,732,368 to 1,732,604
_1631
Psest_1632: Psest_1632 - Predicted permeases, at 1,732,605 to 1,733,360
_1632
Psest_1633: Psest_1633 - Protein of unknown function (DUF3365)., at 1,733,540 to 1,734,097
_1633
Psest_1634: Psest_1634 - tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain, at 1,734,201 to 1,736,183
_1634
Position (kb)
1733
1734
1735 Strain fitness (log2 ratio)
-1
0
1
2 at 1732.699 kb on + strand, within Psest_1632 at 1732.700 kb on - strand, within Psest_1632 at 1732.700 kb on - strand, within Psest_1632 at 1732.700 kb on - strand, within Psest_1632 at 1732.792 kb on + strand, within Psest_1632 at 1732.793 kb on - strand, within Psest_1632 at 1732.793 kb on - strand, within Psest_1632 at 1733.352 kb on + strand at 1733.352 kb on + strand at 1733.352 kb on + strand at 1733.353 kb on - strand at 1733.353 kb on - strand at 1733.353 kb on - strand at 1733.353 kb on - strand at 1733.353 kb on - strand at 1733.353 kb on - strand at 1733.353 kb on - strand at 1733.353 kb on - strand at 1733.461 kb on + strand at 1733.461 kb on + strand at 1733.461 kb on + strand at 1733.462 kb on - strand at 1733.462 kb on - strand at 1733.462 kb on - strand at 1733.511 kb on + strand at 1733.639 kb on + strand, within Psest_1633 at 1733.639 kb on + strand, within Psest_1633 at 1733.639 kb on + strand, within Psest_1633 at 1733.639 kb on + strand, within Psest_1633 at 1733.640 kb on - strand, within Psest_1633 at 1733.642 kb on + strand, within Psest_1633 at 1733.642 kb on + strand, within Psest_1633 at 1733.642 kb on + strand, within Psest_1633 at 1733.642 kb on + strand, within Psest_1633 at 1733.642 kb on + strand, within Psest_1633 at 1733.642 kb on + strand, within Psest_1633 at 1733.642 kb on + strand, within Psest_1633 at 1733.643 kb on - strand, within Psest_1633 at 1733.643 kb on - strand, within Psest_1633 at 1733.643 kb on - strand, within Psest_1633 at 1733.709 kb on + strand, within Psest_1633 at 1733.710 kb on - strand, within Psest_1633 at 1734.056 kb on + strand at 1734.109 kb on + strand at 1734.110 kb on - strand at 1734.206 kb on + strand at 1734.365 kb on - strand at 1734.431 kb on - strand, within Psest_1634 at 1734.431 kb on - strand, within Psest_1634 at 1734.481 kb on + strand, within Psest_1634 at 1734.560 kb on - strand, within Psest_1634 at 1734.691 kb on + strand, within Psest_1634 at 1734.691 kb on + strand, within Psest_1634
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,732,699 + Psest_1632 0.12 +0.2 1,732,700 - Psest_1632 0.13 +0.5 1,732,700 - Psest_1632 0.13 -0.1 1,732,700 - Psest_1632 0.13 +0.3 1,732,792 + Psest_1632 0.25 -1.2 1,732,793 - Psest_1632 0.25 +0.0 1,732,793 - Psest_1632 0.25 -0.8 1,733,352 + -0.8 1,733,352 + -0.1 1,733,352 + +1.5 1,733,353 - +0.0 1,733,353 - +1.5 1,733,353 - +1.5 1,733,353 - -0.6 1,733,353 - +1.2 1,733,353 - +1.5 1,733,353 - +0.5 1,733,353 - +0.5 1,733,461 + +2.5 1,733,461 + -0.1 1,733,461 + +0.5 1,733,462 - -0.1 1,733,462 - +0.5 1,733,462 - +1.1 1,733,511 + +1.2 1,733,639 + Psest_1633 0.18 -0.5 1,733,639 + Psest_1633 0.18 -0.5 1,733,639 + Psest_1633 0.18 +0.9 1,733,639 + Psest_1633 0.18 -0.8 1,733,640 - Psest_1633 0.18 +0.1 1,733,642 + Psest_1633 0.18 +1.5 1,733,642 + Psest_1633 0.18 -0.5 1,733,642 + Psest_1633 0.18 +0.3 1,733,642 + Psest_1633 0.18 -1.1 1,733,642 + Psest_1633 0.18 +0.2 1,733,642 + Psest_1633 0.18 +1.5 1,733,642 + Psest_1633 0.18 -0.5 1,733,643 - Psest_1633 0.18 -1.3 1,733,643 - Psest_1633 0.18 -1.1 1,733,643 - Psest_1633 0.18 -0.7 1,733,709 + Psest_1633 0.30 +1.5 1,733,710 - Psest_1633 0.30 +1.5 1,734,056 + -0.8 1,734,109 + +0.5 1,734,110 - -0.4 1,734,206 + +0.9 1,734,365 - -0.2 1,734,431 - Psest_1634 0.12 -1.3 1,734,431 - Psest_1634 0.12 +0.2 1,734,481 + Psest_1634 0.14 +1.5 1,734,560 - Psest_1634 0.18 +1.5 1,734,691 + Psest_1634 0.25 +1.5 1,734,691 + Psest_1634 0.25 +2.5
Or see this region's nucleotide sequence