Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1571 and Psest_1572 are separated by 301 nucleotides Psest_1572 and Psest_1573 overlap by 4 nucleotides Psest_1573 and Psest_1574 are separated by 132 nucleotides
Psest_1571: Psest_1571 - cytochrome c oxidase accessory protein FixG, at 1,673,488 to 1,674,906
_1571
Psest_1572: Psest_1572 - Putative effector of murein hydrolase LrgA, at 1,675,208 to 1,675,573
_1572
Psest_1573: Psest_1573 - Putative effector of murein hydrolase, at 1,675,570 to 1,676,280
_1573
Psest_1574: Psest_1574 - phenazine biosynthesis protein PhzF family, at 1,676,413 to 1,677,204
_1574
Position (kb)
1675
1676
1677 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1674.673 kb on - strand, within Psest_1571 at 1674.673 kb on - strand, within Psest_1571 at 1674.813 kb on + strand at 1674.921 kb on + strand at 1674.991 kb on + strand at 1675.166 kb on + strand at 1675.166 kb on + strand at 1675.167 kb on - strand at 1675.389 kb on - strand, within Psest_1572 at 1675.759 kb on + strand, within Psest_1573 at 1675.760 kb on - strand, within Psest_1573 at 1676.146 kb on + strand, within Psest_1573 at 1676.318 kb on + strand at 1676.945 kb on + strand, within Psest_1574 at 1676.946 kb on - strand, within Psest_1574 at 1676.946 kb on - strand, within Psest_1574 at 1676.946 kb on - strand, within Psest_1574 at 1676.989 kb on + strand, within Psest_1574 at 1676.990 kb on - strand, within Psest_1574 at 1676.990 kb on - strand, within Psest_1574 at 1677.203 kb on - strand at 1677.210 kb on + strand at 1677.210 kb on + strand at 1677.210 kb on + strand at 1677.210 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,674,673 - Psest_1571 0.84 +3.1 1,674,673 - Psest_1571 0.84 -0.8 1,674,813 + -0.0 1,674,921 + -1.0 1,674,991 + +0.8 1,675,166 + -0.2 1,675,166 + +0.5 1,675,167 - -1.3 1,675,389 - Psest_1572 0.49 +0.3 1,675,759 + Psest_1573 0.27 +1.5 1,675,760 - Psest_1573 0.27 +0.2 1,676,146 + Psest_1573 0.81 +1.5 1,676,318 + +1.5 1,676,945 + Psest_1574 0.67 -0.0 1,676,946 - Psest_1574 0.67 -1.5 1,676,946 - Psest_1574 0.67 +1.2 1,676,946 - Psest_1574 0.67 -0.0 1,676,989 + Psest_1574 0.73 +0.5 1,676,990 - Psest_1574 0.73 -1.9 1,676,990 - Psest_1574 0.73 +1.0 1,677,203 - -2.3 1,677,210 + +1.2 1,677,210 + +1.1 1,677,210 + +0.5 1,677,210 + -0.5
Or see this region's nucleotide sequence