Strain Fitness in Marinobacter adhaerens HP15 around HP15_1388

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1386 and HP15_1387 are separated by 12 nucleotidesHP15_1387 and HP15_1388 are separated by 168 nucleotidesHP15_1388 and HP15_1389 overlap by 1 nucleotidesHP15_1389 and HP15_1390 are separated by 164 nucleotides HP15_1386: HP15_1386 - ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component, at 1,460,711 to 1,463,197 _1386 HP15_1387: HP15_1387 - ABC-type amino acid transport/signal transduction system, periplasmic domain protein, at 1,463,210 to 1,463,992 _1387 HP15_1388: HP15_1388 - iron-containing alcohol dehydrogenase, at 1,464,161 to 1,465,348 _1388 HP15_1389: HP15_1389 - conserved hypothetical protein, at 1,465,348 to 1,465,902 _1389 HP15_1390: HP15_1390 - peptidase M48, Ste24p, at 1,466,067 to 1,467,344 _1390 Position (kb) 1464 1465 1466Strain fitness (log2 ratio) -2 -1 0 1at 1463.250 kb on + strandat 1463.319 kb on - strand, within HP15_1387at 1463.443 kb on + strand, within HP15_1387at 1463.451 kb on - strand, within HP15_1387at 1463.476 kb on + strand, within HP15_1387at 1463.675 kb on + strand, within HP15_1387at 1463.683 kb on - strand, within HP15_1387at 1463.692 kb on - strand, within HP15_1387at 1463.751 kb on + strand, within HP15_1387at 1463.827 kb on - strand, within HP15_1387at 1463.887 kb on + strand, within HP15_1387at 1463.887 kb on + strand, within HP15_1387at 1463.887 kb on + strand, within HP15_1387at 1464.002 kb on - strandat 1464.176 kb on + strandat 1464.176 kb on + strandat 1464.184 kb on - strandat 1464.184 kb on - strandat 1464.184 kb on - strandat 1464.234 kb on - strandat 1464.403 kb on + strand, within HP15_1388at 1464.485 kb on + strand, within HP15_1388at 1464.599 kb on + strand, within HP15_1388at 1464.639 kb on - strand, within HP15_1388at 1464.731 kb on + strand, within HP15_1388at 1464.763 kb on - strand, within HP15_1388at 1464.799 kb on - strand, within HP15_1388at 1464.901 kb on + strand, within HP15_1388at 1464.909 kb on - strand, within HP15_1388at 1464.962 kb on - strand, within HP15_1388at 1464.972 kb on - strand, within HP15_1388at 1465.030 kb on - strand, within HP15_1388at 1465.257 kb on + strandat 1465.282 kb on + strandat 1465.290 kb on - strandat 1465.454 kb on - strand, within HP15_1389at 1465.506 kb on - strand, within HP15_1389at 1465.689 kb on - strand, within HP15_1389at 1465.707 kb on + strand, within HP15_1389at 1465.715 kb on - strand, within HP15_1389at 1465.748 kb on + strand, within HP15_1389at 1465.804 kb on - strand, within HP15_1389at 1466.022 kb on + strandat 1466.032 kb on - strandat 1466.139 kb on - strandat 1466.171 kb on + strandat 1466.235 kb on + strand, within HP15_1390at 1466.278 kb on - strand, within HP15_1390

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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1,463,250 + -1.1
1,463,319 - HP15_1387 0.14 +0.6
1,463,443 + HP15_1387 0.30 -0.3
1,463,451 - HP15_1387 0.31 +0.1
1,463,476 + HP15_1387 0.34 -0.3
1,463,675 + HP15_1387 0.59 +0.2
1,463,683 - HP15_1387 0.60 -0.9
1,463,692 - HP15_1387 0.62 +0.5
1,463,751 + HP15_1387 0.69 -0.3
1,463,827 - HP15_1387 0.79 +0.7
1,463,887 + HP15_1387 0.86 -0.6
1,463,887 + HP15_1387 0.86 -1.8
1,463,887 + HP15_1387 0.86 -0.5
1,464,002 - +0.7
1,464,176 + -0.2
1,464,176 + -1.2
1,464,184 - +0.3
1,464,184 - -0.1
1,464,184 - -0.5
1,464,234 - -1.7
1,464,403 + HP15_1388 0.20 -0.3
1,464,485 + HP15_1388 0.27 +0.1
1,464,599 + HP15_1388 0.37 +0.1
1,464,639 - HP15_1388 0.40 +1.0
1,464,731 + HP15_1388 0.48 +0.4
1,464,763 - HP15_1388 0.51 -0.6
1,464,799 - HP15_1388 0.54 -0.4
1,464,901 + HP15_1388 0.62 +0.8
1,464,909 - HP15_1388 0.63 +0.0
1,464,962 - HP15_1388 0.67 +1.1
1,464,972 - HP15_1388 0.68 +0.2
1,465,030 - HP15_1388 0.73 +0.8
1,465,257 + +0.5
1,465,282 + -0.7
1,465,290 - +0.4
1,465,454 - HP15_1389 0.19 +0.2
1,465,506 - HP15_1389 0.28 +0.2
1,465,689 - HP15_1389 0.61 -0.2
1,465,707 + HP15_1389 0.65 +0.5
1,465,715 - HP15_1389 0.66 +0.3
1,465,748 + HP15_1389 0.72 +0.4
1,465,804 - HP15_1389 0.82 -0.1
1,466,022 + +0.5
1,466,032 - -0.1
1,466,139 - +0.3
1,466,171 + -0.6
1,466,235 + HP15_1390 0.13 +1.1
1,466,278 - HP15_1390 0.17 -0.9

Or see this region's nucleotide sequence