Strain Fitness in Marinobacter adhaerens HP15 around HP15_1034

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1033 and HP15_1034 are separated by 150 nucleotidesHP15_1034 and HP15_1035 are separated by 102 nucleotides HP15_1033: HP15_1033 - flavoprotein, NADB Rossmann superfamily, at 1,051,461 to 1,052,642 _1033 HP15_1034: HP15_1034 - Zn-dependent alcohol dehydrogenase, at 1,052,793 to 1,053,851 _1034 HP15_1035: HP15_1035 - phenazine biosynthesis protein, PhzF family, at 1,053,954 to 1,054,757 _1035 Position (kb) 1052 1053 1054Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1051.793 kb on - strand, within HP15_1033at 1051.798 kb on - strand, within HP15_1033at 1051.798 kb on - strand, within HP15_1033at 1051.887 kb on + strand, within HP15_1033at 1051.933 kb on + strand, within HP15_1033at 1052.071 kb on - strand, within HP15_1033at 1052.077 kb on - strand, within HP15_1033at 1052.187 kb on + strand, within HP15_1033at 1052.397 kb on + strand, within HP15_1033at 1052.410 kb on - strand, within HP15_1033at 1052.415 kb on - strand, within HP15_1033at 1052.555 kb on - strandat 1052.584 kb on + strandat 1052.589 kb on + strandat 1052.589 kb on + strandat 1052.589 kb on + strandat 1052.589 kb on + strandat 1052.592 kb on - strandat 1052.597 kb on - strandat 1052.646 kb on - strandat 1052.646 kb on - strandat 1052.646 kb on - strandat 1052.698 kb on + strandat 1052.784 kb on + strandat 1052.861 kb on + strandat 1052.878 kb on - strandat 1053.177 kb on - strand, within HP15_1034at 1053.354 kb on + strand, within HP15_1034at 1053.370 kb on + strand, within HP15_1034at 1053.370 kb on + strand, within HP15_1034at 1053.448 kb on - strand, within HP15_1034at 1053.497 kb on - strand, within HP15_1034at 1053.504 kb on + strand, within HP15_1034at 1053.531 kb on - strand, within HP15_1034at 1053.608 kb on + strand, within HP15_1034at 1053.645 kb on - strand, within HP15_1034at 1053.803 kb on + strandat 1053.941 kb on + strandat 1054.070 kb on + strand, within HP15_1035at 1054.204 kb on + strand, within HP15_1035at 1054.222 kb on - strand, within HP15_1035at 1054.232 kb on + strand, within HP15_1035at 1054.255 kb on - strand, within HP15_1035at 1054.286 kb on + strand, within HP15_1035at 1054.341 kb on + strand, within HP15_1035at 1054.341 kb on + strand, within HP15_1035at 1054.349 kb on - strand, within HP15_1035at 1054.351 kb on + strand, within HP15_1035at 1054.394 kb on - strand, within HP15_1035at 1054.502 kb on - strand, within HP15_1035at 1054.511 kb on - strand, within HP15_1035at 1054.515 kb on + strand, within HP15_1035at 1054.546 kb on + strand, within HP15_1035at 1054.564 kb on - strand, within HP15_1035at 1054.564 kb on - strand, within HP15_1035at 1054.733 kb on - strandat 1054.747 kb on + strandat 1054.761 kb on - strandat 1054.838 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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1,051,793 - HP15_1033 0.28 +0.4
1,051,798 - HP15_1033 0.29 -1.3
1,051,798 - HP15_1033 0.29 -0.3
1,051,887 + HP15_1033 0.36 -0.3
1,051,933 + HP15_1033 0.40 -0.3
1,052,071 - HP15_1033 0.52 -0.1
1,052,077 - HP15_1033 0.52 -0.5
1,052,187 + HP15_1033 0.61 +0.4
1,052,397 + HP15_1033 0.79 -0.6
1,052,410 - HP15_1033 0.80 +0.1
1,052,415 - HP15_1033 0.81 +2.1
1,052,555 - +0.7
1,052,584 + -0.3
1,052,589 + -0.6
1,052,589 + +0.9
1,052,589 + +0.0
1,052,589 + -0.0
1,052,592 - +0.4
1,052,597 - -3.0
1,052,646 - +0.3
1,052,646 - -0.2
1,052,646 - +1.4
1,052,698 + -0.6
1,052,784 + -0.7
1,052,861 + -0.1
1,052,878 - -0.0
1,053,177 - HP15_1034 0.36 -0.3
1,053,354 + HP15_1034 0.53 -0.3
1,053,370 + HP15_1034 0.54 +0.4
1,053,370 + HP15_1034 0.54 -0.3
1,053,448 - HP15_1034 0.62 +0.0
1,053,497 - HP15_1034 0.66 -0.3
1,053,504 + HP15_1034 0.67 -0.3
1,053,531 - HP15_1034 0.70 -0.3
1,053,608 + HP15_1034 0.77 +0.5
1,053,645 - HP15_1034 0.80 +0.2
1,053,803 + -0.1
1,053,941 + +0.1
1,054,070 + HP15_1035 0.14 -0.2
1,054,204 + HP15_1035 0.31 -0.3
1,054,222 - HP15_1035 0.33 +0.0
1,054,232 + HP15_1035 0.35 -0.7
1,054,255 - HP15_1035 0.37 -0.3
1,054,286 + HP15_1035 0.41 +0.1
1,054,341 + HP15_1035 0.48 +0.3
1,054,341 + HP15_1035 0.48 +0.4
1,054,349 - HP15_1035 0.49 -0.1
1,054,351 + HP15_1035 0.49 -0.0
1,054,394 - HP15_1035 0.55 -0.9
1,054,502 - HP15_1035 0.68 +0.2
1,054,511 - HP15_1035 0.69 -0.7
1,054,515 + HP15_1035 0.70 +0.1
1,054,546 + HP15_1035 0.74 +0.8
1,054,564 - HP15_1035 0.76 +1.1
1,054,564 - HP15_1035 0.76 -0.4
1,054,733 - +0.9
1,054,747 + +0.5
1,054,761 - +0.6
1,054,838 - -0.1

Or see this region's nucleotide sequence