Strain Fitness in Shewanella amazonensis SB2B around Sama_0016

Experiment: Cisplatin 0.0025 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.0025 mg/ml
13,541	+	recF	Sama_0015	0.23	-2.5
13,542	-	recF	Sama_0015	0.23	-1.7
13,542	-	recF	Sama_0015	0.23	-1.8
13,630	+	recF	Sama_0015	0.31	-2.8
13,630	+	recF	Sama_0015	0.31	-3.3
13,630	+	recF	Sama_0015	0.31	+1.1
13,630	+	recF	Sama_0015	0.31	-1.0
13,630	+	recF	Sama_0015	0.31	-1.7
13,630	+	recF	Sama_0015	0.31	-1.2
13,630	+	recF	Sama_0015	0.31	-1.9
13,630	+	recF	Sama_0015	0.31	-1.7
13,631	-	recF	Sama_0015	0.31	-1.5
13,631	-	recF	Sama_0015	0.31	-2.2
13,631	-	recF	Sama_0015	0.31	-1.3
13,631	-	recF	Sama_0015	0.31	-2.7
13,635	-	recF	Sama_0015	0.31	-2.0
13,635	-	recF	Sama_0015	0.31	-1.3
13,635	-	recF	Sama_0015	0.31	-3.0
13,635	-	recF	Sama_0015	0.31	-1.8
13,647	-	recF	Sama_0015	0.32	-1.7
13,701	-	recF	Sama_0015	0.37	-1.4
13,701	-	recF	Sama_0015	0.37	-3.1
13,754	+	recF	Sama_0015	0.42	-2.5
13,754	+	recF	Sama_0015	0.42	+0.1
13,755	-	recF	Sama_0015	0.42	-0.9
13,838	-	recF	Sama_0015	0.50	-1.2
13,841	+	recF	Sama_0015	0.50	-2.4
13,867	+	recF	Sama_0015	0.53	-2.1
13,867	+	recF	Sama_0015	0.53	-2.5
13,878	+	recF	Sama_0015	0.54	-3.0
13,878	+	recF	Sama_0015	0.54	-0.3
13,878	+	recF	Sama_0015	0.54	-2.1
13,878	+	recF	Sama_0015	0.54	-2.0
13,878	+	recF	Sama_0015	0.54	-2.9
13,879	-	recF	Sama_0015	0.54	-1.5
13,879	-	recF	Sama_0015	0.54	-2.8
13,879	-	recF	Sama_0015	0.54	-2.5
13,882	+	recF	Sama_0015	0.54	-3.3
13,882	+	recF	Sama_0015	0.54	-0.5
13,882	+	recF	Sama_0015	0.54	-1.8
13,882	+	recF	Sama_0015	0.54	-4.0
13,883	-	recF	Sama_0015	0.54	-0.9
13,883	-	recF	Sama_0015	0.54	-2.8
13,883	-	recF	Sama_0015	0.54	-2.1
13,883	-	recF	Sama_0015	0.54	-1.7
13,883	-	recF	Sama_0015	0.54	-2.2
13,883	-	recF	Sama_0015	0.54	-1.7
13,904	+	recF	Sama_0015	0.56	-2.8
13,904	+	recF	Sama_0015	0.56	+0.1
13,904	+	recF	Sama_0015	0.56	-1.2
13,910	+	recF	Sama_0015	0.57	-1.3
13,910	+	recF	Sama_0015	0.57	-1.5
13,912	+	recF	Sama_0015	0.57	-1.3
13,912	+	recF	Sama_0015	0.57	-2.3
14,007	+	recF	Sama_0015	0.66	-1.7
14,026	+	recF	Sama_0015	0.67	-0.9
14,033	+	recF	Sama_0015	0.68	-3.0
14,033	+	recF	Sama_0015	0.68	-2.0
14,051	+	recF	Sama_0015	0.70	-1.9
14,051	+	recF	Sama_0015	0.70	-2.7
14,078	+	recF	Sama_0015	0.72	+0.1
14,078	+	recF	Sama_0015	0.72	-0.9
14,122	+	recF	Sama_0015	0.76	-1.4
14,162	+	recF	Sama_0015	0.80	-1.2
14,162	+	recF	Sama_0015	0.80	-1.5
14,162	+	recF	Sama_0015	0.80	-3.7
14,190	+	recF	Sama_0015	0.83	-1.9
14,190	+	recF	Sama_0015	0.83	-0.9
14,190	+	recF	Sama_0015	0.83	-3.6
14,190	+	recF	Sama_0015	0.83	-0.9
14,190	+	recF	Sama_0015	0.83	-1.2
14,257	+	recF	Sama_0015	0.89	-2.6
14,257	+	recF	Sama_0015	0.89	+0.1
14,257	+	recF	Sama_0015	0.89	-2.1
14,261	+	recF	Sama_0015	0.89	-2.4
14,261	+	recF	Sama_0015	0.89	-1.9
14,347	+				-4.5
14,347	+				-3.4
14,347	+				-3.7
14,372	+				-0.1
14,372	+				-0.3
14,372	+				-0.5
14,372	+				-0.2
14,376	+				-0.3
14,376	+				-1.5
14,376	+				-0.4
14,376	+				+0.8
16,886	+				+0.7
16,886	+				-0.7
16,886	+				-0.7
16,886	+				+0.1
16,886	+				-0.6
16,887	-				+1.1
16,957	-				+0.6
16,986	+				-0.4
16,986	+				-0.2
16,987	-				-0.3
16,987	-				-0.2
16,987	-				-0.9
16,987	-				+0.1
17,010	+				-2.3
17,010	+				-1.0
17,010	+				-0.0
17,010	+				+1.7
17,010	+				+0.3
17,011	-				-1.0
17,011	-				+0.8
17,021	+				-0.3
17,040	-		Sama_0017	0.12	+0.4
17,064	+		Sama_0017	0.18	+0.1
17,064	+		Sama_0017	0.18	+0.6
17,064	+		Sama_0017	0.18	-0.1
17,064	+		Sama_0017	0.18	-0.2
17,064	+		Sama_0017	0.18	-0.7
17,064	+		Sama_0017	0.18	+0.1
17,064	+		Sama_0017	0.18	-0.8
17,064	+		Sama_0017	0.18	-0.0
17,064	+		Sama_0017	0.18	-0.4
17,065	-		Sama_0017	0.18	+0.9
17,065	-		Sama_0017	0.18	+0.3
17,065	-		Sama_0017	0.18	-2.6
17,065	-		Sama_0017	0.18	+0.7
17,065	-		Sama_0017	0.18	+0.3
17,065	-		Sama_0017	0.18	-0.2
17,065	-		Sama_0017	0.18	+0.3
17,065	-		Sama_0017	0.18	-0.2
17,065	-		Sama_0017	0.18	+1.7
17,065	-		Sama_0017	0.18	-1.1
17,065	-		Sama_0017	0.18	-0.0
17,065	-		Sama_0017	0.18	-0.4
17,065	-		Sama_0017	0.18	-0.2
17,065	-		Sama_0017	0.18	-0.0
17,117	+		Sama_0017	0.31	-2.0
17,118	-		Sama_0017	0.31	-0.6
17,118	-		Sama_0017	0.31	+1.1
17,147	+		Sama_0017	0.39	-0.7
17,148	-		Sama_0017	0.39	-2.2
17,148	-		Sama_0017	0.39	-2.1
17,165	-		Sama_0017	0.43	+0.2
17,165	-		Sama_0017	0.43	-0.6
17,179	+		Sama_0017	0.47	+0.6
17,180	-		Sama_0017	0.47	+0.7
17,180	-		Sama_0017	0.47	-0.1
17,194	+		Sama_0017	0.50	+1.1
17,238	+		Sama_0017	0.61	+0.5
17,238	+		Sama_0017	0.61	+0.2
17,238	+		Sama_0017	0.61	+0.6
17,238	+		Sama_0017	0.61	-0.7
17,238	+		Sama_0017	0.61	+0.0
17,238	+		Sama_0017	0.61	-0.0
17,238	+		Sama_0017	0.61	+0.7
17,238	+		Sama_0017	0.61	-1.2
17,239	-		Sama_0017	0.61	+0.8
17,239	-		Sama_0017	0.61	-0.5
17,239	-		Sama_0017	0.61	+0.4
17,239	-		Sama_0017	0.61	+1.4
17,239	-		Sama_0017	0.61	+0.1
17,239	-		Sama_0017	0.61	-0.2
17,253	+		Sama_0017	0.65	+0.7
17,253	+		Sama_0017	0.65	-1.3
17,253	+		Sama_0017	0.65	+0.5
17,253	+		Sama_0017	0.65	+0.4
17,254	-		Sama_0017	0.65	+0.7
17,254	-		Sama_0017	0.65	-0.2
17,254	-		Sama_0017	0.65	-0.1
17,254	-		Sama_0017	0.65	-0.2
17,254	-		Sama_0017	0.65	-0.5
17,254	-		Sama_0017	0.65	+0.1
17,254	-		Sama_0017	0.65	+0.4
17,254	-		Sama_0017	0.65	-2.2
17,254	-		Sama_0017	0.65	+0.3
17,300	+		Sama_0017	0.77	-2.3
17,300	+		Sama_0017	0.77	-1.2
17,301	-		Sama_0017	0.77	-0.1
17,301	-		Sama_0017	0.77	-0.4
17,301	-		Sama_0017	0.77	-1.5
17,318	+		Sama_0017	0.81	-1.3
17,319	-		Sama_0017	0.81	-0.5
17,319	-		Sama_0017	0.81	-0.6
17,319	-		Sama_0017	0.81	-0.7
17,322	+		Sama_0017	0.82	-0.6
17,333	+		Sama_0017	0.85	-0.7
17,378	+				+0.3
17,379	-				+0.4
17,379	-				-0.3
17,379	-				-0.5
17,491	+		Sama_0018	0.15	+0.2
17,491	+		Sama_0018	0.15	-0.5
17,491	+		Sama_0018	0.15	+1.1
17,491	+		Sama_0018	0.15	+0.1
17,491	+		Sama_0018	0.15	+0.3
17,491	+		Sama_0018	0.15	-0.3
17,491	+		Sama_0018	0.15	+0.2
17,491	+		Sama_0018	0.15	+0.6
17,491	+		Sama_0018	0.15	+0.1
17,491	+		Sama_0018	0.15	+0.1
17,491	+		Sama_0018	0.15	-1.2
17,491	+		Sama_0018	0.15	+0.1
17,491	+		Sama_0018	0.15	-0.9
17,492	-		Sama_0018	0.15	-1.3
17,492	-		Sama_0018	0.15	-2.3
17,492	-		Sama_0018	0.15	+0.8
17,492	-		Sama_0018	0.15	-1.1
17,540	-		Sama_0018	0.22	+1.1
17,595	+		Sama_0018	0.31	-0.3
17,595	+		Sama_0018	0.31	-0.5
17,595	+		Sama_0018	0.31	-0.8
17,596	-		Sama_0018	0.31	+0.7
17,596	-		Sama_0018	0.31	-1.3
17,596	-		Sama_0018	0.31	-0.3
17,704	-		Sama_0018	0.48	-0.3
17,704	-		Sama_0018	0.48	+0.5
17,863	-		Sama_0018	0.72	-0.0
17,863	-		Sama_0018	0.72	-0.6
17,880	-		Sama_0018	0.74	-0.0