Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_734 and HP15_735 overlap by 4 nucleotides HP15_735 and HP15_736 overlap by 1 nucleotides HP15_736 and HP15_737 are separated by 115 nucleotides HP15_737 and HP15_738 overlap by 4 nucleotides HP15_738 and HP15_739 are separated by 178 nucleotides
HP15_734: HP15_734 - septum site-determining protein MinC, at 743,854 to 744,615
_734
HP15_735: HP15_735 - type III effector HopPmaJ, at 744,612 to 745,001
_735
HP15_736: HP15_736 - protein containing DUF1244, at 745,001 to 745,279
_736
HP15_737: HP15_737 - DNA polymerase IV, at 745,395 to 746,459
_737
HP15_738: HP15_738 - phosphoesterase, PA-phosphatase, at 746,456 to 746,791
_738
HP15_739: HP15_739 - glycosyl transferase, group 1 family protein, at 746,970 to 748,190
_739
Position (kb) 745
746
747 Strain fitness (log2 ratio) -1
0
1
2 at 744.418 kb on + strand, within HP15_734 at 744.424 kb on - strand, within HP15_734 at 744.546 kb on - strand at 744.546 kb on - strand at 744.650 kb on + strand at 744.850 kb on - strand, within HP15_735 at 744.889 kb on + strand, within HP15_735 at 744.931 kb on - strand, within HP15_735 at 745.131 kb on + strand, within HP15_736 at 745.131 kb on + strand, within HP15_736 at 745.227 kb on - strand, within HP15_736 at 745.443 kb on + strand at 745.443 kb on + strand at 745.451 kb on - strand at 745.476 kb on - strand at 745.501 kb on - strand at 745.612 kb on - strand, within HP15_737 at 745.639 kb on - strand, within HP15_737 at 745.649 kb on - strand, within HP15_737 at 745.650 kb on - strand, within HP15_737 at 745.731 kb on - strand, within HP15_737 at 745.923 kb on + strand, within HP15_737 at 745.940 kb on + strand, within HP15_737 at 745.986 kb on + strand, within HP15_737 at 745.994 kb on - strand, within HP15_737 at 746.051 kb on + strand, within HP15_737 at 746.051 kb on + strand, within HP15_737 at 746.088 kb on - strand, within HP15_737 at 746.141 kb on - strand, within HP15_737 at 746.189 kb on - strand, within HP15_737 at 746.189 kb on - strand, within HP15_737 at 746.293 kb on + strand, within HP15_737 at 746.294 kb on - strand, within HP15_737 at 746.404 kb on - strand at 746.461 kb on + strand at 746.471 kb on + strand at 746.497 kb on - strand, within HP15_738 at 746.504 kb on - strand, within HP15_738 at 746.717 kb on + strand, within HP15_738 at 746.774 kb on - strand at 746.795 kb on - strand at 746.797 kb on + strand at 746.907 kb on + strand at 746.912 kb on + strand at 746.976 kb on - strand at 747.097 kb on - strand, within HP15_739 at 747.101 kb on + strand, within HP15_739 at 747.168 kb on - strand, within HP15_739 at 747.170 kb on + strand, within HP15_739 at 747.182 kb on + strand, within HP15_739 at 747.204 kb on + strand, within HP15_739 at 747.238 kb on - strand, within HP15_739
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 744,418 + HP15_734 0.74 +1.8 744,424 - HP15_734 0.75 -0.4 744,546 - -0.1 744,546 - +1.0 744,650 + -0.0 744,850 - HP15_735 0.61 -0.6 744,889 + HP15_735 0.71 +1.6 744,931 - HP15_735 0.82 -0.5 745,131 + HP15_736 0.47 -0.6 745,131 + HP15_736 0.47 +2.0 745,227 - HP15_736 0.81 +0.8 745,443 + -0.4 745,443 + +1.5 745,451 - +1.6 745,476 - -0.4 745,501 - +2.0 745,612 - HP15_737 0.20 +1.6 745,639 - HP15_737 0.23 -0.8 745,649 - HP15_737 0.24 -0.2 745,650 - HP15_737 0.24 +1.6 745,731 - HP15_737 0.32 +1.9 745,923 + HP15_737 0.50 +1.5 745,940 + HP15_737 0.51 +0.3 745,986 + HP15_737 0.55 +1.8 745,994 - HP15_737 0.56 +1.0 746,051 + HP15_737 0.62 +1.7 746,051 + HP15_737 0.62 +0.1 746,088 - HP15_737 0.65 +1.9 746,141 - HP15_737 0.70 -0.3 746,189 - HP15_737 0.75 +2.1 746,189 - HP15_737 0.75 -0.3 746,293 + HP15_737 0.84 -1.0 746,294 - HP15_737 0.84 +2.6 746,404 - -0.6 746,461 + +1.5 746,471 + -0.5 746,497 - HP15_738 0.12 +2.0 746,504 - HP15_738 0.14 -0.8 746,717 + HP15_738 0.78 +1.6 746,774 - -1.2 746,795 - +0.5 746,797 + +0.1 746,907 + -0.5 746,912 + -0.4 746,976 - -0.4 747,097 - HP15_739 0.10 -0.3 747,101 + HP15_739 0.11 -0.6 747,168 - HP15_739 0.16 +1.8 747,170 + HP15_739 0.16 -0.4 747,182 + HP15_739 0.17 +0.4 747,204 + HP15_739 0.19 -0.3 747,238 - HP15_739 0.22 +2.1
Or see this region's nucleotide sequence