Strain Fitness in Marinobacter adhaerens HP15 around HP15_697

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_692 and HP15_693 overlap by 7 nucleotidesHP15_693 and HP15_694 overlap by 1 nucleotidesHP15_694 and HP15_695 overlap by 20 nucleotidesHP15_695 and HP15_696 overlap by 7 nucleotidesHP15_696 and HP15_697 overlap by 1 nucleotidesHP15_697 and HP15_698 overlap by 1 nucleotidesHP15_698 and HP15_699 are separated by 59 nucleotides HP15_692: HP15_692 - phage protein, at 706,257 to 706,877 _692 HP15_693: HP15_693 - hypothetical protein, at 706,871 to 707,218 _693 HP15_694: HP15_694 - conserved hypothetical protein, at 707,218 to 707,478 _694 HP15_695: HP15_695 - conserved hypothetical protein, at 707,459 to 707,650 _695 HP15_696: HP15_696 - conserved hypothetical protein, at 707,644 to 707,871 _696 HP15_697: HP15_697 - conserved hypothetical protein, at 707,871 to 708,542 _697 HP15_698: HP15_698 - conserved hypothetical protein, at 708,542 to 708,838 _698 HP15_699: HP15_699 - conserved hypothetical protein, at 708,898 to 710,031 _699 Position (kb) 707 708 709Strain fitness (log2 ratio) -2 -1 0 1 2at 707.071 kb on - strand, within HP15_693at 707.121 kb on - strand, within HP15_693at 707.149 kb on - strand, within HP15_693at 707.209 kb on - strandat 707.394 kb on - strand, within HP15_694at 707.443 kb on - strand, within HP15_694at 707.457 kb on - strandat 707.480 kb on - strand, within HP15_695at 707.545 kb on - strand, within HP15_695at 707.580 kb on - strand, within HP15_695at 707.592 kb on - strand, within HP15_695at 707.643 kb on - strandat 707.726 kb on + strand, within HP15_696at 707.779 kb on - strand, within HP15_696at 707.834 kb on - strand, within HP15_696at 707.853 kb on - strandat 707.871 kb on - strandat 707.873 kb on - strandat 707.979 kb on - strand, within HP15_697at 708.037 kb on - strand, within HP15_697at 708.116 kb on - strand, within HP15_697at 708.165 kb on + strand, within HP15_697at 708.241 kb on + strand, within HP15_697at 708.402 kb on - strand, within HP15_697at 708.434 kb on - strand, within HP15_697at 708.489 kb on - strandat 708.825 kb on - strandat 708.827 kb on + strandat 708.827 kb on + strandat 708.827 kb on + strandat 708.835 kb on - strandat 708.835 kb on - strandat 708.947 kb on - strandat 708.947 kb on - strandat 708.947 kb on - strandat 708.949 kb on + strandat 709.085 kb on + strand, within HP15_699at 709.170 kb on + strand, within HP15_699at 709.197 kb on + strand, within HP15_699at 709.205 kb on - strand, within HP15_699at 709.409 kb on - strand, within HP15_699at 709.495 kb on - strand, within HP15_699at 709.505 kb on + strand, within HP15_699at 709.513 kb on - strand, within HP15_699at 709.513 kb on - strand, within HP15_699at 709.520 kb on + strand, within HP15_699

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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707,071 - HP15_693 0.57 -0.4
707,121 - HP15_693 0.72 -0.4
707,149 - HP15_693 0.80 -0.7
707,209 - +2.0
707,394 - HP15_694 0.67 -0.3
707,443 - HP15_694 0.86 +0.4
707,457 - +0.1
707,480 - HP15_695 0.11 -0.4
707,545 - HP15_695 0.45 -0.0
707,580 - HP15_695 0.63 -0.4
707,592 - HP15_695 0.69 -0.5
707,643 - +1.8
707,726 + HP15_696 0.36 +1.7
707,779 - HP15_696 0.59 +0.7
707,834 - HP15_696 0.83 +1.7
707,853 - -2.0
707,871 - -0.4
707,873 - +1.7
707,979 - HP15_697 0.16 +2.3
708,037 - HP15_697 0.25 -0.9
708,116 - HP15_697 0.36 -0.2
708,165 + HP15_697 0.44 +0.6
708,241 + HP15_697 0.55 -0.5
708,402 - HP15_697 0.79 +1.3
708,434 - HP15_697 0.84 +2.0
708,489 - -0.0
708,825 - -0.9
708,827 + +0.1
708,827 + +0.3
708,827 + -1.4
708,835 - +1.5
708,835 - +2.1
708,947 - -0.5
708,947 - +1.7
708,947 - +1.8
708,949 + +0.1
709,085 + HP15_699 0.16 -0.4
709,170 + HP15_699 0.24 +0.5
709,197 + HP15_699 0.26 -0.2
709,205 - HP15_699 0.27 -1.3
709,409 - HP15_699 0.45 -0.1
709,495 - HP15_699 0.53 -0.9
709,505 + HP15_699 0.54 +1.6
709,513 - HP15_699 0.54 -1.5
709,513 - HP15_699 0.54 -1.8
709,520 + HP15_699 0.55 -0.2

Or see this region's nucleotide sequence