Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_616 and HP15_617 are separated by 46 nucleotides HP15_617 and HP15_618 are separated by 80 nucleotides HP15_618 and HP15_619 are separated by 82 nucleotides
HP15_616: HP15_616 - UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase, at 638,387 to 639,781
_616
HP15_617: HP15_617 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 639,828 to 640,475
_617
HP15_618: HP15_618 - acyl-CoA dehydrogenase domain protein, at 640,556 to 641,737
_618
HP15_619: HP15_619 - protein belonging to uncharacterized protein family UPF0061, at 641,820 to 643,562
_619
Position (kb) 640
641
642 Strain fitness (log2 ratio) -1
0
1
2 at 639.693 kb on + strand at 639.756 kb on - strand at 640.469 kb on + strand at 640.470 kb on + strand at 640.488 kb on - strand at 640.493 kb on + strand at 640.826 kb on + strand, within HP15_618 at 640.850 kb on + strand, within HP15_618 at 640.858 kb on - strand, within HP15_618 at 640.865 kb on - strand, within HP15_618 at 640.941 kb on - strand, within HP15_618 at 640.997 kb on + strand, within HP15_618 at 641.107 kb on + strand, within HP15_618 at 641.130 kb on + strand, within HP15_618 at 641.266 kb on - strand, within HP15_618 at 641.288 kb on + strand, within HP15_618 at 641.376 kb on + strand, within HP15_618 at 641.393 kb on - strand, within HP15_618 at 641.516 kb on - strand, within HP15_618 at 641.584 kb on - strand, within HP15_618 at 641.614 kb on - strand, within HP15_618 at 641.656 kb on + strand at 641.664 kb on - strand at 641.667 kb on + strand at 641.667 kb on + strand at 641.764 kb on + strand at 641.777 kb on - strand at 641.777 kb on - strand at 641.782 kb on - strand at 641.987 kb on + strand at 642.000 kb on - strand, within HP15_619 at 642.010 kb on + strand, within HP15_619 at 642.075 kb on - strand, within HP15_619 at 642.110 kb on + strand, within HP15_619 at 642.248 kb on + strand, within HP15_619 at 642.285 kb on - strand, within HP15_619 at 642.418 kb on + strand, within HP15_619 at 642.669 kb on - strand, within HP15_619
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 639,693 + -0.3 639,756 - +1.7 640,469 + -0.8 640,470 + -0.7 640,488 - +1.7 640,493 + +0.2 640,826 + HP15_618 0.23 +1.3 640,850 + HP15_618 0.25 +0.2 640,858 - HP15_618 0.26 -0.7 640,865 - HP15_618 0.26 +0.5 640,941 - HP15_618 0.33 -0.6 640,997 + HP15_618 0.37 +0.1 641,107 + HP15_618 0.47 +0.0 641,130 + HP15_618 0.49 -0.1 641,266 - HP15_618 0.60 +0.2 641,288 + HP15_618 0.62 -1.4 641,376 + HP15_618 0.69 -1.0 641,393 - HP15_618 0.71 -0.5 641,516 - HP15_618 0.81 -0.3 641,584 - HP15_618 0.87 -0.5 641,614 - HP15_618 0.90 +0.1 641,656 + -0.4 641,664 - +0.0 641,667 + -1.4 641,667 + -0.6 641,764 + +0.7 641,777 - -0.8 641,777 - +1.9 641,782 - +2.0 641,987 + +0.7 642,000 - HP15_619 0.10 +1.4 642,010 + HP15_619 0.11 -0.3 642,075 - HP15_619 0.15 +2.3 642,110 + HP15_619 0.17 -0.0 642,248 + HP15_619 0.25 -0.9 642,285 - HP15_619 0.27 +1.8 642,418 + HP15_619 0.34 +1.5 642,669 - HP15_619 0.49 +0.5
Or see this region's nucleotide sequence