Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g49 and HP15_p187g50 are separated by 0 nucleotides HP15_p187g50 and HP15_p187g51 overlap by 4 nucleotides HP15_p187g51 and HP15_p187g52 are separated by 94 nucleotides HP15_p187g52 and HP15_p187g53 are separated by 452 nucleotides
HP15_p187g49: HP15_p187g49 - dTDP-4-dehydrorhamnose reductase, at 42,760 to 43,134
_p187g49
HP15_p187g50: HP15_p187g50 - glucose-1-phosphate thymidylyltransferase 1, at 43,135 to 44,019
_p187g50
HP15_p187g51: HP15_p187g51 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 44,016 to 44,561
_p187g51
HP15_p187g52: HP15_p187g52 - hypothetical protein, at 44,656 to 44,775
_p187g52
HP15_p187g53: HP15_p187g53 - polysaccharide biosynthesis-like protein, at 45,228 to 46,652
_p187g53
Position (kb) 44
45 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 43.053 kb on + strand, within HP15_p187g49 at 43.053 kb on + strand, within HP15_p187g49 at 43.061 kb on - strand, within HP15_p187g49 at 43.071 kb on + strand, within HP15_p187g49 at 43.117 kb on - strand at 43.142 kb on + strand at 43.142 kb on + strand at 43.150 kb on - strand at 43.173 kb on + strand at 43.196 kb on + strand at 43.204 kb on - strand at 43.386 kb on - strand, within HP15_p187g50 at 43.393 kb on + strand, within HP15_p187g50 at 43.396 kb on - strand, within HP15_p187g50 at 43.401 kb on - strand, within HP15_p187g50 at 43.401 kb on - strand, within HP15_p187g50 at 43.436 kb on + strand, within HP15_p187g50 at 43.436 kb on + strand, within HP15_p187g50 at 43.436 kb on + strand, within HP15_p187g50 at 43.442 kb on + strand, within HP15_p187g50 at 43.442 kb on + strand, within HP15_p187g50 at 43.444 kb on - strand, within HP15_p187g50 at 43.450 kb on - strand, within HP15_p187g50 at 43.450 kb on - strand, within HP15_p187g50 at 43.461 kb on + strand, within HP15_p187g50 at 43.472 kb on + strand, within HP15_p187g50 at 43.480 kb on - strand, within HP15_p187g50 at 43.543 kb on - strand, within HP15_p187g50 at 43.568 kb on - strand, within HP15_p187g50 at 43.601 kb on + strand, within HP15_p187g50 at 43.649 kb on + strand, within HP15_p187g50 at 43.745 kb on + strand, within HP15_p187g50 at 43.762 kb on - strand, within HP15_p187g50 at 43.782 kb on - strand, within HP15_p187g50 at 44.143 kb on + strand, within HP15_p187g51 at 44.151 kb on - strand, within HP15_p187g51 at 44.161 kb on - strand, within HP15_p187g51 at 44.161 kb on - strand, within HP15_p187g51 at 44.166 kb on - strand, within HP15_p187g51 at 44.219 kb on + strand, within HP15_p187g51 at 44.222 kb on - strand, within HP15_p187g51 at 44.227 kb on - strand, within HP15_p187g51 at 44.243 kb on + strand, within HP15_p187g51 at 44.262 kb on + strand, within HP15_p187g51 at 44.262 kb on + strand, within HP15_p187g51 at 44.263 kb on + strand, within HP15_p187g51 at 44.271 kb on - strand, within HP15_p187g51 at 44.308 kb on + strand, within HP15_p187g51 at 44.308 kb on + strand, within HP15_p187g51 at 44.316 kb on - strand, within HP15_p187g51 at 44.316 kb on - strand, within HP15_p187g51 at 44.332 kb on + strand, within HP15_p187g51 at 44.339 kb on + strand, within HP15_p187g51 at 44.344 kb on + strand, within HP15_p187g51 at 44.347 kb on - strand, within HP15_p187g51 at 44.391 kb on - strand, within HP15_p187g51 at 44.425 kb on - strand, within HP15_p187g51 at 44.457 kb on + strand, within HP15_p187g51 at 44.465 kb on - strand, within HP15_p187g51 at 44.494 kb on + strand, within HP15_p187g51 at 44.534 kb on + strand at 44.534 kb on + strand at 44.537 kb on - strand at 44.537 kb on - strand at 44.667 kb on - strand at 44.691 kb on + strand, within HP15_p187g52 at 44.758 kb on + strand, within HP15_p187g52 at 44.775 kb on + strand at 44.775 kb on + strand at 44.775 kb on + strand at 44.775 kb on + strand at 44.783 kb on - strand at 44.783 kb on - strand at 44.783 kb on - strand at 44.783 kb on - strand at 44.783 kb on - strand at 44.783 kb on - strand at 44.783 kb on - strand at 44.884 kb on + strand at 44.906 kb on - strand at 44.910 kb on + strand at 44.942 kb on - strand at 44.942 kb on - strand at 44.942 kb on - strand at 44.950 kb on + strand at 44.950 kb on - strand at 44.961 kb on + strand at 44.965 kb on - strand at 44.965 kb on - strand at 45.042 kb on + strand at 45.042 kb on + strand at 45.050 kb on - strand at 45.052 kb on + strand at 45.068 kb on + strand at 45.076 kb on + strand at 45.084 kb on - strand at 45.092 kb on + strand at 45.092 kb on + strand at 45.102 kb on - strand at 45.113 kb on + strand at 45.128 kb on - strand at 45.220 kb on + strand at 45.228 kb on - strand at 45.228 kb on - strand at 45.275 kb on - strand at 45.324 kb on - strand at 45.333 kb on - strand at 45.359 kb on + strand at 45.365 kb on - strand at 45.365 kb on - strand at 45.365 kb on - strand at 45.367 kb on - strand at 45.367 kb on - strand at 45.367 kb on - strand at 45.380 kb on + strand, within HP15_p187g53 at 45.388 kb on - strand, within HP15_p187g53 at 45.388 kb on - strand, within HP15_p187g53 at 45.388 kb on - strand, within HP15_p187g53 at 45.400 kb on + strand, within HP15_p187g53 at 45.400 kb on + strand, within HP15_p187g53 at 45.418 kb on + strand, within HP15_p187g53 at 45.418 kb on + strand, within HP15_p187g53 at 45.418 kb on + strand, within HP15_p187g53 at 45.418 kb on + strand, within HP15_p187g53 at 45.418 kb on + strand, within HP15_p187g53 at 45.425 kb on + strand, within HP15_p187g53 at 45.426 kb on - strand, within HP15_p187g53 at 45.426 kb on - strand, within HP15_p187g53 at 45.432 kb on + strand, within HP15_p187g53
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 43,053 + HP15_p187g49 0.78 -1.1 43,053 + HP15_p187g49 0.78 -0.1 43,061 - HP15_p187g49 0.80 +0.6 43,071 + HP15_p187g49 0.83 +1.2 43,117 - +0.7 43,142 + +0.5 43,142 + +1.6 43,150 - +1.8 43,173 + +0.7 43,196 + -0.0 43,204 - +0.3 43,386 - HP15_p187g50 0.28 -0.9 43,393 + HP15_p187g50 0.29 +1.5 43,396 - HP15_p187g50 0.29 -0.6 43,401 - HP15_p187g50 0.30 -0.0 43,401 - HP15_p187g50 0.30 +0.5 43,436 + HP15_p187g50 0.34 +1.6 43,436 + HP15_p187g50 0.34 -0.7 43,436 + HP15_p187g50 0.34 -1.5 43,442 + HP15_p187g50 0.35 +1.0 43,442 + HP15_p187g50 0.35 -1.0 43,444 - HP15_p187g50 0.35 -0.7 43,450 - HP15_p187g50 0.36 +0.6 43,450 - HP15_p187g50 0.36 -0.9 43,461 + HP15_p187g50 0.37 -0.5 43,472 + HP15_p187g50 0.38 +1.4 43,480 - HP15_p187g50 0.39 -0.3 43,543 - HP15_p187g50 0.46 -0.5 43,568 - HP15_p187g50 0.49 +1.3 43,601 + HP15_p187g50 0.53 -0.4 43,649 + HP15_p187g50 0.58 -0.2 43,745 + HP15_p187g50 0.69 +1.4 43,762 - HP15_p187g50 0.71 +0.3 43,782 - HP15_p187g50 0.73 +0.6 44,143 + HP15_p187g51 0.23 -0.1 44,151 - HP15_p187g51 0.25 -0.6 44,161 - HP15_p187g51 0.27 -0.4 44,161 - HP15_p187g51 0.27 +0.1 44,166 - HP15_p187g51 0.27 -0.6 44,219 + HP15_p187g51 0.37 +0.6 44,222 - HP15_p187g51 0.38 +1.2 44,227 - HP15_p187g51 0.39 +1.3 44,243 + HP15_p187g51 0.42 +1.4 44,262 + HP15_p187g51 0.45 +0.6 44,262 + HP15_p187g51 0.45 -0.4 44,263 + HP15_p187g51 0.45 +1.3 44,271 - HP15_p187g51 0.47 -0.2 44,308 + HP15_p187g51 0.53 -0.8 44,308 + HP15_p187g51 0.53 -0.1 44,316 - HP15_p187g51 0.55 -0.5 44,316 - HP15_p187g51 0.55 -0.6 44,332 + HP15_p187g51 0.58 -0.4 44,339 + HP15_p187g51 0.59 +2.3 44,344 + HP15_p187g51 0.60 -0.4 44,347 - HP15_p187g51 0.61 -0.5 44,391 - HP15_p187g51 0.69 -0.9 44,425 - HP15_p187g51 0.75 +1.6 44,457 + HP15_p187g51 0.81 +0.1 44,465 - HP15_p187g51 0.82 -0.5 44,494 + HP15_p187g51 0.88 -1.4 44,534 + -1.5 44,534 + +0.3 44,537 - -0.3 44,537 - +0.9 44,667 - +1.3 44,691 + HP15_p187g52 0.29 +0.3 44,758 + HP15_p187g52 0.85 +1.5 44,775 + -0.6 44,775 + +1.1 44,775 + +1.0 44,775 + -1.1 44,783 - -0.5 44,783 - -0.0 44,783 - -0.2 44,783 - +2.1 44,783 - +1.8 44,783 - -0.2 44,783 - +1.8 44,884 + +1.9 44,906 - -0.1 44,910 + +1.3 44,942 - -3.1 44,942 - -0.9 44,942 - -2.1 44,950 + -0.1 44,950 - +1.2 44,961 + -0.3 44,965 - -0.4 44,965 - -0.0 45,042 + -0.2 45,042 + +0.3 45,050 - -0.1 45,052 + +0.4 45,068 + +0.8 45,076 + -0.3 45,084 - -0.6 45,092 + -0.9 45,092 + +1.2 45,102 - +1.5 45,113 + +1.3 45,128 - -0.4 45,220 + +1.3 45,228 - -1.0 45,228 - +2.0 45,275 - -0.6 45,324 - +0.2 45,333 - -0.9 45,359 + +2.8 45,365 - -0.8 45,365 - -0.2 45,365 - +0.1 45,367 - -0.7 45,367 - +1.9 45,367 - +1.7 45,380 + HP15_p187g53 0.11 -1.1 45,388 - HP15_p187g53 0.11 -0.7 45,388 - HP15_p187g53 0.11 -0.5 45,388 - HP15_p187g53 0.11 -0.5 45,400 + HP15_p187g53 0.12 +1.0 45,400 + HP15_p187g53 0.12 +1.2 45,418 + HP15_p187g53 0.13 +1.7 45,418 + HP15_p187g53 0.13 -0.7 45,418 + HP15_p187g53 0.13 +0.7 45,418 + HP15_p187g53 0.13 +0.3 45,418 + HP15_p187g53 0.13 +1.6 45,425 + HP15_p187g53 0.14 -0.3 45,426 - HP15_p187g53 0.14 -0.6 45,426 - HP15_p187g53 0.14 -0.1 45,432 + HP15_p187g53 0.14 -0.6
Or see this region's nucleotide sequence