Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_35 and HP15_36 are separated by 2 nucleotides HP15_36 and HP15_37 are separated by 382 nucleotides
HP15_35: HP15_35 - thiolase, at 39,616 to 40,806
_35
HP15_36: HP15_36 - protein containing DUF35, at 40,809 to 40,964
_36
HP15_37: HP15_37 - 3-ketoacyl-(acyl-carrier-protein) reductase, at 41,347 to 42,048
_37
Position (kb) 40
41 Strain fitness (log2 ratio) -1
0
1
2 at 39.873 kb on - strand, within HP15_35 at 39.876 kb on + strand, within HP15_35 at 39.943 kb on + strand, within HP15_35 at 40.001 kb on + strand, within HP15_35 at 40.014 kb on - strand, within HP15_35 at 40.035 kb on + strand, within HP15_35 at 40.078 kb on + strand, within HP15_35 at 40.084 kb on + strand, within HP15_35 at 40.086 kb on - strand, within HP15_35 at 40.086 kb on - strand, within HP15_35 at 40.165 kb on - strand, within HP15_35 at 40.178 kb on - strand, within HP15_35 at 40.178 kb on - strand, within HP15_35 at 40.217 kb on + strand, within HP15_35 at 40.231 kb on - strand, within HP15_35 at 40.231 kb on - strand, within HP15_35 at 40.335 kb on - strand, within HP15_35 at 40.353 kb on - strand, within HP15_35 at 40.407 kb on + strand, within HP15_35 at 40.415 kb on - strand, within HP15_35 at 40.443 kb on + strand, within HP15_35 at 40.537 kb on + strand, within HP15_35 at 40.537 kb on + strand, within HP15_35 at 40.577 kb on + strand, within HP15_35 at 40.577 kb on - strand, within HP15_35 at 40.584 kb on + strand, within HP15_35 at 40.587 kb on - strand, within HP15_35 at 40.677 kb on - strand, within HP15_35 at 40.771 kb on - strand at 40.815 kb on - strand at 40.832 kb on + strand, within HP15_36 at 40.903 kb on + strand, within HP15_36 at 40.987 kb on - strand at 40.987 kb on - strand at 40.987 kb on - strand at 40.995 kb on - strand at 41.084 kb on + strand at 41.115 kb on - strand at 41.322 kb on + strand at 41.535 kb on - strand, within HP15_37 at 41.551 kb on + strand, within HP15_37 at 41.626 kb on - strand, within HP15_37 at 41.645 kb on - strand, within HP15_37 at 41.712 kb on + strand, within HP15_37 at 41.752 kb on - strand, within HP15_37 at 41.779 kb on + strand, within HP15_37 at 41.779 kb on + strand, within HP15_37 at 41.811 kb on + strand, within HP15_37 at 41.928 kb on - strand, within HP15_37 at 41.938 kb on - strand, within HP15_37
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 39,873 - HP15_35 0.22 -0.9 39,876 + HP15_35 0.22 -0.1 39,943 + HP15_35 0.27 +1.5 40,001 + HP15_35 0.32 +0.1 40,014 - HP15_35 0.33 -0.5 40,035 + HP15_35 0.35 -0.2 40,078 + HP15_35 0.39 +0.3 40,084 + HP15_35 0.39 -0.3 40,086 - HP15_35 0.39 -0.7 40,086 - HP15_35 0.39 +1.0 40,165 - HP15_35 0.46 +0.1 40,178 - HP15_35 0.47 +1.7 40,178 - HP15_35 0.47 -0.5 40,217 + HP15_35 0.50 -0.1 40,231 - HP15_35 0.52 +0.0 40,231 - HP15_35 0.52 +0.5 40,335 - HP15_35 0.60 -0.3 40,353 - HP15_35 0.62 -0.3 40,407 + HP15_35 0.66 -0.4 40,415 - HP15_35 0.67 +1.5 40,443 + HP15_35 0.69 +1.2 40,537 + HP15_35 0.77 -0.8 40,537 + HP15_35 0.77 +1.8 40,577 + HP15_35 0.81 +2.3 40,577 - HP15_35 0.81 -0.1 40,584 + HP15_35 0.81 -0.2 40,587 - HP15_35 0.82 -0.4 40,677 - HP15_35 0.89 +0.1 40,771 - -0.3 40,815 - +0.3 40,832 + HP15_36 0.15 +0.3 40,903 + HP15_36 0.60 +1.7 40,987 - -0.2 40,987 - +1.7 40,987 - +1.6 40,995 - -0.1 41,084 + +1.8 41,115 - -0.5 41,322 + -0.3 41,535 - HP15_37 0.27 -1.3 41,551 + HP15_37 0.29 -0.4 41,626 - HP15_37 0.40 +0.5 41,645 - HP15_37 0.42 +0.6 41,712 + HP15_37 0.52 +1.4 41,752 - HP15_37 0.58 -0.4 41,779 + HP15_37 0.62 +1.7 41,779 + HP15_37 0.62 -0.5 41,811 + HP15_37 0.66 +0.4 41,928 - HP15_37 0.83 -0.4 41,938 - HP15_37 0.84 +1.4
Or see this region's nucleotide sequence