Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_313 and HP15_314 are separated by 12 nucleotides HP15_314 and HP15_tRNA2 are separated by 199 nucleotides HP15_tRNA2 and HP15_315 are separated by 96 nucleotides
HP15_313: HP15_313 - conserved hypothetical protein, secreted, at 306,403 to 309,630
_313
HP15_314: HP15_314 - membrane protein involved in aromatic hydrocarbon degradation, at 309,643 to 310,980
_314
HP15_tRNA2: HP15_tRNA2 - tRNA-Met, at 311,180 to 311,256
_tRNA2
HP15_315: HP15_315 - RNA polymerase, sigma 70 subunit, RpoD, at 311,353 to 313,200
_315
Position (kb) 309
310
311 Strain fitness (log2 ratio) -1
0
1
2 at 308.652 kb on + strand, within HP15_313 at 308.664 kb on + strand, within HP15_313 at 308.672 kb on - strand, within HP15_313 at 308.827 kb on - strand, within HP15_313 at 308.871 kb on + strand, within HP15_313 at 308.879 kb on - strand, within HP15_313 at 308.901 kb on + strand, within HP15_313 at 308.901 kb on + strand, within HP15_313 at 308.909 kb on - strand, within HP15_313 at 308.909 kb on - strand, within HP15_313 at 308.909 kb on - strand, within HP15_313 at 308.911 kb on - strand, within HP15_313 at 308.911 kb on - strand, within HP15_313 at 308.920 kb on + strand, within HP15_313 at 308.955 kb on - strand, within HP15_313 at 309.097 kb on - strand, within HP15_313 at 309.136 kb on + strand, within HP15_313 at 309.249 kb on + strand, within HP15_313 at 309.391 kb on - strand at 309.515 kb on + strand at 309.523 kb on - strand at 309.523 kb on - strand at 309.584 kb on + strand at 309.606 kb on + strand at 309.641 kb on + strand at 309.729 kb on + strand at 309.729 kb on + strand at 309.785 kb on + strand, within HP15_314 at 309.785 kb on + strand, within HP15_314 at 309.795 kb on + strand, within HP15_314 at 309.892 kb on - strand, within HP15_314 at 309.892 kb on - strand, within HP15_314 at 310.010 kb on - strand, within HP15_314 at 310.192 kb on - strand, within HP15_314 at 310.270 kb on + strand, within HP15_314 at 310.300 kb on - strand, within HP15_314 at 310.712 kb on + strand, within HP15_314 at 310.777 kb on + strand, within HP15_314 at 310.795 kb on - strand, within HP15_314 at 310.916 kb on - strand at 310.996 kb on - strand at 311.310 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 308,652 + HP15_313 0.70 -0.7 308,664 + HP15_313 0.70 -0.4 308,672 - HP15_313 0.70 -0.4 308,827 - HP15_313 0.75 +1.0 308,871 + HP15_313 0.76 -0.3 308,879 - HP15_313 0.77 -0.3 308,901 + HP15_313 0.77 -0.4 308,901 + HP15_313 0.77 +0.7 308,909 - HP15_313 0.78 -0.3 308,909 - HP15_313 0.78 -0.2 308,909 - HP15_313 0.78 +1.7 308,911 - HP15_313 0.78 -0.4 308,911 - HP15_313 0.78 +1.8 308,920 + HP15_313 0.78 -0.5 308,955 - HP15_313 0.79 -1.6 309,097 - HP15_313 0.83 +1.5 309,136 + HP15_313 0.85 +0.5 309,249 + HP15_313 0.88 -0.4 309,391 - +0.6 309,515 + -0.9 309,523 - -0.2 309,523 - -0.5 309,584 + -0.1 309,606 + -0.8 309,641 + +1.7 309,729 + +1.3 309,729 + +0.9 309,785 + HP15_314 0.11 -0.2 309,785 + HP15_314 0.11 -0.1 309,795 + HP15_314 0.11 +1.3 309,892 - HP15_314 0.19 +1.9 309,892 - HP15_314 0.19 +1.6 310,010 - HP15_314 0.27 +0.7 310,192 - HP15_314 0.41 +1.2 310,270 + HP15_314 0.47 -0.4 310,300 - HP15_314 0.49 +1.6 310,712 + HP15_314 0.80 +0.6 310,777 + HP15_314 0.85 +1.8 310,795 - HP15_314 0.86 +1.0 310,916 - +0.7 310,996 - +1.8 311,310 + -0.7
Or see this region's nucleotide sequence