Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2629 and HP15_2630 are separated by 232 nucleotides HP15_2630 and HP15_2631 overlap by 4 nucleotides HP15_2631 and HP15_2632 are separated by 97 nucleotides
HP15_2629: HP15_2629 - PpiC-type peptidyl-prolyl cis-trans isomerase, at 2,780,866 to 2,781,150
_2629
HP15_2630: HP15_2630 - succinyl-CoA synthetase, beta subunit, at 2,781,383 to 2,782,090
_2630
HP15_2631: HP15_2631 - Xaa-Pro aminopeptidase, at 2,782,087 to 2,783,268
_2631
HP15_2632: HP15_2632 - ribonuclease Z, at 2,783,366 to 2,784,445
_2632
Position (kb)
2782
2783
2784 Strain fitness (log2 ratio)
-1
0
1
2 at 2781.124 kb on - strand at 2781.276 kb on - strand at 2781.278 kb on + strand at 2781.278 kb on + strand at 2781.298 kb on - strand at 2781.299 kb on + strand at 2781.408 kb on + strand at 2781.502 kb on + strand, within HP15_2630 at 2781.732 kb on + strand, within HP15_2630 at 2781.756 kb on + strand, within HP15_2630 at 2781.813 kb on + strand, within HP15_2630 at 2781.813 kb on + strand, within HP15_2630 at 2781.821 kb on - strand, within HP15_2630 at 2781.821 kb on - strand, within HP15_2630 at 2781.821 kb on - strand, within HP15_2630 at 2781.850 kb on - strand, within HP15_2630 at 2781.883 kb on - strand, within HP15_2630 at 2781.941 kb on + strand, within HP15_2630 at 2782.232 kb on + strand, within HP15_2631 at 2782.246 kb on + strand, within HP15_2631 at 2782.282 kb on - strand, within HP15_2631 at 2782.367 kb on + strand, within HP15_2631 at 2782.499 kb on + strand, within HP15_2631 at 2782.499 kb on + strand, within HP15_2631 at 2782.515 kb on - strand, within HP15_2631 at 2782.563 kb on - strand, within HP15_2631 at 2782.564 kb on - strand, within HP15_2631 at 2782.564 kb on - strand, within HP15_2631 at 2782.586 kb on - strand, within HP15_2631 at 2782.613 kb on - strand, within HP15_2631 at 2782.895 kb on - strand, within HP15_2631 at 2782.903 kb on + strand, within HP15_2631 at 2782.970 kb on + strand, within HP15_2631 at 2782.999 kb on - strand, within HP15_2631 at 2783.215 kb on + strand at 2783.293 kb on - strand at 2783.371 kb on - strand at 2783.409 kb on - strand at 2783.414 kb on - strand at 2783.414 kb on - strand at 2783.420 kb on + strand at 2783.454 kb on - strand at 2783.579 kb on + strand, within HP15_2632 at 2783.586 kb on + strand, within HP15_2632 at 2783.587 kb on - strand, within HP15_2632 at 2783.928 kb on - strand, within HP15_2632 at 2783.998 kb on + strand, within HP15_2632 at 2784.111 kb on + strand, within HP15_2632 at 2784.225 kb on - strand, within HP15_2632 at 2784.236 kb on - strand, within HP15_2632
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 2,781,124 - -0.5 2,781,276 - -0.3 2,781,278 + +1.9 2,781,278 + +1.5 2,781,298 - -0.1 2,781,299 + -0.6 2,781,408 + -0.3 2,781,502 + HP15_2630 0.17 +0.1 2,781,732 + HP15_2630 0.49 +1.5 2,781,756 + HP15_2630 0.53 -0.5 2,781,813 + HP15_2630 0.61 -1.0 2,781,813 + HP15_2630 0.61 +1.4 2,781,821 - HP15_2630 0.62 +1.8 2,781,821 - HP15_2630 0.62 +0.1 2,781,821 - HP15_2630 0.62 -0.2 2,781,850 - HP15_2630 0.66 -1.0 2,781,883 - HP15_2630 0.71 +0.8 2,781,941 + HP15_2630 0.79 +0.1 2,782,232 + HP15_2631 0.12 +0.6 2,782,246 + HP15_2631 0.13 +0.4 2,782,282 - HP15_2631 0.16 +0.1 2,782,367 + HP15_2631 0.24 +0.5 2,782,499 + HP15_2631 0.35 +1.1 2,782,499 + HP15_2631 0.35 +0.2 2,782,515 - HP15_2631 0.36 -0.8 2,782,563 - HP15_2631 0.40 -0.3 2,782,564 - HP15_2631 0.40 -1.0 2,782,564 - HP15_2631 0.40 -0.2 2,782,586 - HP15_2631 0.42 -0.8 2,782,613 - HP15_2631 0.45 -0.4 2,782,895 - HP15_2631 0.68 +1.4 2,782,903 + HP15_2631 0.69 +0.5 2,782,970 + HP15_2631 0.75 +0.4 2,782,999 - HP15_2631 0.77 -0.1 2,783,215 + +0.3 2,783,293 - +1.6 2,783,371 - +0.2 2,783,409 - +1.3 2,783,414 - +1.4 2,783,414 - +0.3 2,783,420 + +0.2 2,783,454 - -0.5 2,783,579 + HP15_2632 0.20 -0.5 2,783,586 + HP15_2632 0.20 -0.5 2,783,587 - HP15_2632 0.20 -0.4 2,783,928 - HP15_2632 0.52 +0.3 2,783,998 + HP15_2632 0.59 +0.3 2,784,111 + HP15_2632 0.69 -0.1 2,784,225 - HP15_2632 0.80 -0.3 2,784,236 - HP15_2632 0.81 -0.2
Or see this region's nucleotide sequence