Strain Fitness in Marinobacter adhaerens HP15 around HP15_2631

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2629 and HP15_2630 are separated by 232 nucleotidesHP15_2630 and HP15_2631 overlap by 4 nucleotidesHP15_2631 and HP15_2632 are separated by 97 nucleotides HP15_2629: HP15_2629 - PpiC-type peptidyl-prolyl cis-trans isomerase, at 2,780,866 to 2,781,150 _2629 HP15_2630: HP15_2630 - succinyl-CoA synthetase, beta subunit, at 2,781,383 to 2,782,090 _2630 HP15_2631: HP15_2631 - Xaa-Pro aminopeptidase, at 2,782,087 to 2,783,268 _2631 HP15_2632: HP15_2632 - ribonuclease Z, at 2,783,366 to 2,784,445 _2632 Position (kb) 2782 2783 2784Strain fitness (log2 ratio) -1 0 1 2at 2781.124 kb on - strandat 2781.276 kb on - strandat 2781.278 kb on + strandat 2781.278 kb on + strandat 2781.298 kb on - strandat 2781.299 kb on + strandat 2781.408 kb on + strandat 2781.502 kb on + strand, within HP15_2630at 2781.732 kb on + strand, within HP15_2630at 2781.756 kb on + strand, within HP15_2630at 2781.813 kb on + strand, within HP15_2630at 2781.813 kb on + strand, within HP15_2630at 2781.821 kb on - strand, within HP15_2630at 2781.821 kb on - strand, within HP15_2630at 2781.821 kb on - strand, within HP15_2630at 2781.850 kb on - strand, within HP15_2630at 2781.883 kb on - strand, within HP15_2630at 2781.941 kb on + strand, within HP15_2630at 2782.232 kb on + strand, within HP15_2631at 2782.246 kb on + strand, within HP15_2631at 2782.282 kb on - strand, within HP15_2631at 2782.367 kb on + strand, within HP15_2631at 2782.499 kb on + strand, within HP15_2631at 2782.499 kb on + strand, within HP15_2631at 2782.515 kb on - strand, within HP15_2631at 2782.563 kb on - strand, within HP15_2631at 2782.564 kb on - strand, within HP15_2631at 2782.564 kb on - strand, within HP15_2631at 2782.586 kb on - strand, within HP15_2631at 2782.613 kb on - strand, within HP15_2631at 2782.895 kb on - strand, within HP15_2631at 2782.903 kb on + strand, within HP15_2631at 2782.970 kb on + strand, within HP15_2631at 2782.999 kb on - strand, within HP15_2631at 2783.215 kb on + strandat 2783.293 kb on - strandat 2783.371 kb on - strandat 2783.409 kb on - strandat 2783.414 kb on - strandat 2783.414 kb on - strandat 2783.420 kb on + strandat 2783.454 kb on - strandat 2783.579 kb on + strand, within HP15_2632at 2783.586 kb on + strand, within HP15_2632at 2783.587 kb on - strand, within HP15_2632at 2783.928 kb on - strand, within HP15_2632at 2783.998 kb on + strand, within HP15_2632at 2784.111 kb on + strand, within HP15_2632at 2784.225 kb on - strand, within HP15_2632at 2784.236 kb on - strand, within HP15_2632

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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2,781,124 - -0.5
2,781,276 - -0.3
2,781,278 + +1.9
2,781,278 + +1.5
2,781,298 - -0.1
2,781,299 + -0.6
2,781,408 + -0.3
2,781,502 + HP15_2630 0.17 +0.1
2,781,732 + HP15_2630 0.49 +1.5
2,781,756 + HP15_2630 0.53 -0.5
2,781,813 + HP15_2630 0.61 -1.0
2,781,813 + HP15_2630 0.61 +1.4
2,781,821 - HP15_2630 0.62 +1.8
2,781,821 - HP15_2630 0.62 +0.1
2,781,821 - HP15_2630 0.62 -0.2
2,781,850 - HP15_2630 0.66 -1.0
2,781,883 - HP15_2630 0.71 +0.8
2,781,941 + HP15_2630 0.79 +0.1
2,782,232 + HP15_2631 0.12 +0.6
2,782,246 + HP15_2631 0.13 +0.4
2,782,282 - HP15_2631 0.16 +0.1
2,782,367 + HP15_2631 0.24 +0.5
2,782,499 + HP15_2631 0.35 +1.1
2,782,499 + HP15_2631 0.35 +0.2
2,782,515 - HP15_2631 0.36 -0.8
2,782,563 - HP15_2631 0.40 -0.3
2,782,564 - HP15_2631 0.40 -1.0
2,782,564 - HP15_2631 0.40 -0.2
2,782,586 - HP15_2631 0.42 -0.8
2,782,613 - HP15_2631 0.45 -0.4
2,782,895 - HP15_2631 0.68 +1.4
2,782,903 + HP15_2631 0.69 +0.5
2,782,970 + HP15_2631 0.75 +0.4
2,782,999 - HP15_2631 0.77 -0.1
2,783,215 + +0.3
2,783,293 - +1.6
2,783,371 - +0.2
2,783,409 - +1.3
2,783,414 - +1.4
2,783,414 - +0.3
2,783,420 + +0.2
2,783,454 - -0.5
2,783,579 + HP15_2632 0.20 -0.5
2,783,586 + HP15_2632 0.20 -0.5
2,783,587 - HP15_2632 0.20 -0.4
2,783,928 - HP15_2632 0.52 +0.3
2,783,998 + HP15_2632 0.59 +0.3
2,784,111 + HP15_2632 0.69 -0.1
2,784,225 - HP15_2632 0.80 -0.3
2,784,236 - HP15_2632 0.81 -0.2

Or see this region's nucleotide sequence