Strain Fitness in Marinobacter adhaerens HP15 around HP15_25

Experiment: Fumarate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_24 and HP15_25 are separated by 165 nucleotidesHP15_25 and HP15_26 are separated by 47 nucleotides HP15_24: HP15_24 - membrane protein, at 27,808 to 28,092 _24 HP15_25: HP15_25 - methyltransferase, FkbM family protein-like protein, at 28,258 to 29,088 _25 HP15_26: HP15_26 - drug resistance transporter, Bcr/CflA family protein, at 29,136 to 30,332 _26 Position (kb) 28 29 30Strain fitness (log2 ratio) -2 -1 0 1 2at 27.436 kb on + strandat 27.446 kb on + strandat 27.464 kb on - strandat 27.502 kb on + strandat 27.534 kb on + strandat 27.542 kb on - strandat 27.719 kb on - strandat 27.799 kb on + strandat 27.800 kb on + strandat 27.870 kb on + strand, within HP15_24at 27.870 kb on + strand, within HP15_24at 28.004 kb on - strand, within HP15_24at 28.024 kb on - strand, within HP15_24at 28.080 kb on + strandat 28.173 kb on - strandat 28.199 kb on + strandat 28.206 kb on + strandat 28.214 kb on - strandat 28.247 kb on - strandat 28.271 kb on + strandat 28.342 kb on - strand, within HP15_25at 28.362 kb on + strand, within HP15_25at 28.433 kb on - strand, within HP15_25at 28.433 kb on - strand, within HP15_25at 28.451 kb on + strand, within HP15_25at 28.480 kb on - strand, within HP15_25at 28.493 kb on - strand, within HP15_25at 28.582 kb on + strand, within HP15_25at 28.598 kb on + strand, within HP15_25at 28.611 kb on - strand, within HP15_25at 28.624 kb on + strand, within HP15_25at 28.624 kb on + strand, within HP15_25at 28.639 kb on - strand, within HP15_25at 28.639 kb on - strand, within HP15_25at 28.639 kb on - strand, within HP15_25at 28.639 kb on - strand, within HP15_25at 28.646 kb on - strand, within HP15_25at 28.651 kb on - strand, within HP15_25at 28.656 kb on - strand, within HP15_25at 28.679 kb on + strand, within HP15_25at 28.679 kb on + strand, within HP15_25at 28.695 kb on + strand, within HP15_25at 28.716 kb on - strand, within HP15_25at 28.759 kb on - strand, within HP15_25at 28.774 kb on + strand, within HP15_25at 28.801 kb on + strand, within HP15_25at 28.829 kb on + strand, within HP15_25at 28.837 kb on - strand, within HP15_25at 28.866 kb on + strand, within HP15_25at 28.866 kb on + strand, within HP15_25at 28.876 kb on + strand, within HP15_25at 28.879 kb on - strand, within HP15_25at 28.881 kb on + strand, within HP15_25at 28.889 kb on - strand, within HP15_25at 28.942 kb on - strand, within HP15_25at 29.084 kb on + strandat 29.092 kb on + strandat 29.100 kb on - strandat 29.123 kb on + strandat 29.123 kb on + strandat 29.131 kb on - strandat 29.131 kb on - strandat 29.131 kb on - strandat 29.131 kb on - strandat 29.131 kb on - strandat 29.131 kb on - strandat 29.134 kb on + strandat 29.268 kb on - strand, within HP15_26at 29.284 kb on - strand, within HP15_26at 29.298 kb on + strand, within HP15_26at 29.298 kb on + strand, within HP15_26at 29.298 kb on + strand, within HP15_26at 29.306 kb on - strand, within HP15_26at 29.331 kb on + strand, within HP15_26at 29.340 kb on - strand, within HP15_26at 29.405 kb on - strand, within HP15_26at 29.418 kb on + strand, within HP15_26at 29.598 kb on - strand, within HP15_26at 29.616 kb on + strand, within HP15_26at 29.715 kb on + strand, within HP15_26at 29.806 kb on - strand, within HP15_26at 29.822 kb on - strand, within HP15_26at 29.920 kb on - strand, within HP15_26at 29.922 kb on + strand, within HP15_26at 29.941 kb on + strand, within HP15_26at 29.941 kb on + strand, within HP15_26at 29.944 kb on - strand, within HP15_26at 29.949 kb on - strand, within HP15_26at 29.949 kb on - strand, within HP15_26at 29.963 kb on + strand, within HP15_26at 29.970 kb on + strand, within HP15_26at 30.000 kb on + strand, within HP15_26at 30.021 kb on + strand, within HP15_26

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
remove
27,436 + -1.5
27,446 + +1.6
27,464 - +0.7
27,502 + +1.4
27,534 + -0.8
27,542 - +1.6
27,719 - +0.7
27,799 + -1.4
27,800 + +2.4
27,870 + HP15_24 0.22 +0.0
27,870 + HP15_24 0.22 -0.3
28,004 - HP15_24 0.69 -0.5
28,024 - HP15_24 0.76 -0.6
28,080 + +0.1
28,173 - -0.8
28,199 + -0.7
28,206 + +1.8
28,214 - -0.9
28,247 - +1.0
28,271 + +1.3
28,342 - HP15_25 0.10 +1.3
28,362 + HP15_25 0.13 +0.4
28,433 - HP15_25 0.21 -0.1
28,433 - HP15_25 0.21 -0.8
28,451 + HP15_25 0.23 -0.7
28,480 - HP15_25 0.27 +0.4
28,493 - HP15_25 0.28 -0.5
28,582 + HP15_25 0.39 -0.2
28,598 + HP15_25 0.41 -0.5
28,611 - HP15_25 0.42 +1.5
28,624 + HP15_25 0.44 +0.0
28,624 + HP15_25 0.44 +1.6
28,639 - HP15_25 0.46 +0.1
28,639 - HP15_25 0.46 +1.5
28,639 - HP15_25 0.46 -0.3
28,639 - HP15_25 0.46 +0.2
28,646 - HP15_25 0.47 -0.4
28,651 - HP15_25 0.47 +1.8
28,656 - HP15_25 0.48 +1.7
28,679 + HP15_25 0.51 +1.1
28,679 + HP15_25 0.51 +0.2
28,695 + HP15_25 0.53 +0.1
28,716 - HP15_25 0.55 -2.0
28,759 - HP15_25 0.60 +2.2
28,774 + HP15_25 0.62 +0.2
28,801 + HP15_25 0.65 +0.9
28,829 + HP15_25 0.69 +0.1
28,837 - HP15_25 0.70 +0.8
28,866 + HP15_25 0.73 +1.7
28,866 + HP15_25 0.73 -0.3
28,876 + HP15_25 0.74 -0.2
28,879 - HP15_25 0.75 +2.0
28,881 + HP15_25 0.75 -0.5
28,889 - HP15_25 0.76 +1.5
28,942 - HP15_25 0.82 +1.9
29,084 + +0.3
29,092 + -0.1
29,100 - -0.2
29,123 + +1.7
29,123 + -1.4
29,131 - +1.7
29,131 - +1.0
29,131 - +0.1
29,131 - +0.2
29,131 - +1.9
29,131 - -0.7
29,134 + +1.9
29,268 - HP15_26 0.11 -0.1
29,284 - HP15_26 0.12 +1.9
29,298 + HP15_26 0.14 -0.8
29,298 + HP15_26 0.14 -0.5
29,298 + HP15_26 0.14 -1.1
29,306 - HP15_26 0.14 +1.5
29,331 + HP15_26 0.16 -0.4
29,340 - HP15_26 0.17 +1.6
29,405 - HP15_26 0.22 +1.3
29,418 + HP15_26 0.24 +2.4
29,598 - HP15_26 0.39 -0.2
29,616 + HP15_26 0.40 -0.4
29,715 + HP15_26 0.48 +1.3
29,806 - HP15_26 0.56 -0.8
29,822 - HP15_26 0.57 -0.1
29,920 - HP15_26 0.65 -0.7
29,922 + HP15_26 0.66 -0.4
29,941 + HP15_26 0.67 -0.1
29,941 + HP15_26 0.67 -0.8
29,944 - HP15_26 0.68 -0.1
29,949 - HP15_26 0.68 +1.8
29,949 - HP15_26 0.68 +0.3
29,963 + HP15_26 0.69 +1.9
29,970 + HP15_26 0.70 +2.5
30,000 + HP15_26 0.72 -0.8
30,021 + HP15_26 0.74 -1.8

Or see this region's nucleotide sequence