Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2376 and HP15_2377 are separated by 351 nucleotides HP15_2377 and HP15_2378 are separated by 3 nucleotides HP15_2378 and HP15_2379 are separated by 36 nucleotides
HP15_2376: HP15_2376 - conserved hypothetical protein, secreted, at 2,504,746 to 2,505,630
_2376
HP15_2377: HP15_2377 - response regulator receiver protein, at 2,505,982 to 2,507,010
_2377
HP15_2378: HP15_2378 - sensory box/GGDEF family protein, at 2,507,014 to 2,507,967
_2378
HP15_2379: HP15_2379 - transcriptional regulator MvaT, P16 subunit, at 2,508,004 to 2,508,372
_2379
Position (kb)
2505
2506
2507
2508 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2504.985 kb on - strand, within HP15_2376 at 2504.998 kb on + strand, within HP15_2376 at 2504.998 kb on + strand, within HP15_2376 at 2504.998 kb on + strand, within HP15_2376 at 2504.998 kb on + strand, within HP15_2376 at 2504.998 kb on + strand, within HP15_2376 at 2504.998 kb on + strand, within HP15_2376 at 2504.998 kb on + strand, within HP15_2376 at 2505.006 kb on - strand, within HP15_2376 at 2505.006 kb on - strand, within HP15_2376 at 2505.006 kb on - strand, within HP15_2376 at 2505.006 kb on - strand, within HP15_2376 at 2505.188 kb on + strand, within HP15_2376 at 2505.196 kb on - strand, within HP15_2376 at 2505.196 kb on - strand, within HP15_2376 at 2505.230 kb on + strand, within HP15_2376 at 2505.232 kb on - strand, within HP15_2376 at 2505.482 kb on + strand, within HP15_2376 at 2505.584 kb on + strand at 2505.592 kb on - strand at 2505.762 kb on + strand at 2505.762 kb on + strand at 2505.768 kb on + strand at 2505.790 kb on - strand at 2505.884 kb on + strand at 2505.971 kb on - strand at 2505.989 kb on + strand at 2506.015 kb on + strand at 2506.047 kb on + strand at 2506.141 kb on + strand, within HP15_2377 at 2506.305 kb on - strand, within HP15_2377 at 2506.337 kb on + strand, within HP15_2377 at 2506.354 kb on - strand, within HP15_2377 at 2506.372 kb on + strand, within HP15_2377 at 2506.475 kb on + strand, within HP15_2377 at 2506.547 kb on + strand, within HP15_2377 at 2506.611 kb on + strand, within HP15_2377 at 2506.746 kb on + strand, within HP15_2377 at 2506.758 kb on + strand, within HP15_2377 at 2506.816 kb on - strand, within HP15_2377 at 2506.825 kb on + strand, within HP15_2377 at 2506.826 kb on - strand, within HP15_2377 at 2506.869 kb on - strand, within HP15_2377 at 2506.913 kb on + strand at 2506.943 kb on + strand at 2507.206 kb on + strand, within HP15_2378 at 2507.247 kb on + strand, within HP15_2378 at 2507.270 kb on + strand, within HP15_2378 at 2507.365 kb on + strand, within HP15_2378 at 2507.378 kb on + strand, within HP15_2378 at 2507.433 kb on - strand, within HP15_2378 at 2507.472 kb on - strand, within HP15_2378 at 2507.571 kb on + strand, within HP15_2378 at 2507.573 kb on + strand, within HP15_2378 at 2507.795 kb on + strand, within HP15_2378 at 2507.795 kb on + strand, within HP15_2378 at 2507.795 kb on + strand, within HP15_2378 at 2507.796 kb on - strand, within HP15_2378 at 2507.803 kb on - strand, within HP15_2378 at 2507.803 kb on - strand, within HP15_2378 at 2507.820 kb on - strand, within HP15_2378 at 2507.830 kb on - strand, within HP15_2378 at 2507.862 kb on - strand, within HP15_2378 at 2507.959 kb on - strand at 2507.963 kb on - strand at 2507.986 kb on + strand at 2508.000 kb on + strand at 2508.005 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 2,504,985 - HP15_2376 0.27 -0.4 2,504,998 + HP15_2376 0.28 +1.5 2,504,998 + HP15_2376 0.28 -0.4 2,504,998 + HP15_2376 0.28 -1.4 2,504,998 + HP15_2376 0.28 +0.8 2,504,998 + HP15_2376 0.28 -0.8 2,504,998 + HP15_2376 0.28 -1.3 2,504,998 + HP15_2376 0.28 +2.1 2,505,006 - HP15_2376 0.29 +0.0 2,505,006 - HP15_2376 0.29 +0.1 2,505,006 - HP15_2376 0.29 +1.5 2,505,006 - HP15_2376 0.29 -0.9 2,505,188 + HP15_2376 0.50 -0.5 2,505,196 - HP15_2376 0.51 -0.7 2,505,196 - HP15_2376 0.51 -0.7 2,505,230 + HP15_2376 0.55 -0.5 2,505,232 - HP15_2376 0.55 +1.4 2,505,482 + HP15_2376 0.83 -0.4 2,505,584 + -0.1 2,505,592 - -0.4 2,505,762 + +1.7 2,505,762 + +0.1 2,505,768 + -1.5 2,505,790 - +0.2 2,505,884 + +0.1 2,505,971 - +0.1 2,505,989 + +1.6 2,506,015 + -0.2 2,506,047 + +1.2 2,506,141 + HP15_2377 0.15 +0.4 2,506,305 - HP15_2377 0.31 +0.0 2,506,337 + HP15_2377 0.34 +1.6 2,506,354 - HP15_2377 0.36 +0.3 2,506,372 + HP15_2377 0.38 +2.4 2,506,475 + HP15_2377 0.48 -0.0 2,506,547 + HP15_2377 0.55 +2.0 2,506,611 + HP15_2377 0.61 -0.9 2,506,746 + HP15_2377 0.74 +1.6 2,506,758 + HP15_2377 0.75 -0.5 2,506,816 - HP15_2377 0.81 +1.6 2,506,825 + HP15_2377 0.82 -0.9 2,506,826 - HP15_2377 0.82 -0.1 2,506,869 - HP15_2377 0.86 -0.0 2,506,913 + +1.5 2,506,943 + +0.1 2,507,206 + HP15_2378 0.20 +0.2 2,507,247 + HP15_2378 0.24 +1.4 2,507,270 + HP15_2378 0.27 +1.1 2,507,365 + HP15_2378 0.37 +1.8 2,507,378 + HP15_2378 0.38 +0.2 2,507,433 - HP15_2378 0.44 -0.2 2,507,472 - HP15_2378 0.48 -0.3 2,507,571 + HP15_2378 0.58 -0.7 2,507,573 + HP15_2378 0.59 +0.6 2,507,795 + HP15_2378 0.82 +0.2 2,507,795 + HP15_2378 0.82 -1.3 2,507,795 + HP15_2378 0.82 -0.9 2,507,796 - HP15_2378 0.82 -0.6 2,507,803 - HP15_2378 0.83 +0.5 2,507,803 - HP15_2378 0.83 +2.1 2,507,820 - HP15_2378 0.84 +0.0 2,507,830 - HP15_2378 0.86 -0.9 2,507,862 - HP15_2378 0.89 -0.4 2,507,959 - +0.4 2,507,963 - -2.1 2,507,986 + +0.0 2,508,000 + +0.2 2,508,005 - +0.3
Or see this region's nucleotide sequence