Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1911 and HP15_1912 are separated by 423 nucleotides HP15_1912 and HP15_1913 are separated by 7 nucleotides
HP15_1911: HP15_1911 - beta 1,4-N-acetylgalactosaminyltransferase-transferase-III-like protein, at 2,023,179 to 2,025,203
_1911
HP15_1912: HP15_1912 - polysaccharide biosynthesis protein, at 2,025,627 to 2,026,790
_1912
HP15_1913: HP15_1913 - glycosyltransferase, at 2,026,798 to 2,027,919
_1913
Position (kb)
2025
2026
2027 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2024.663 kb on - strand, within HP15_1911 at 2024.751 kb on + strand, within HP15_1911 at 2024.773 kb on - strand, within HP15_1911 at 2024.813 kb on - strand, within HP15_1911 at 2025.078 kb on - strand at 2025.098 kb on + strand at 2025.177 kb on - strand at 2025.439 kb on - strand at 2025.522 kb on + strand at 2025.522 kb on + strand at 2025.534 kb on + strand at 2025.544 kb on + strand at 2025.643 kb on - strand at 2025.707 kb on - strand at 2025.783 kb on + strand, within HP15_1912 at 2025.791 kb on - strand, within HP15_1912 at 2025.813 kb on + strand, within HP15_1912 at 2025.927 kb on + strand, within HP15_1912 at 2025.946 kb on + strand, within HP15_1912 at 2026.018 kb on + strand, within HP15_1912 at 2026.036 kb on - strand, within HP15_1912 at 2026.052 kb on + strand, within HP15_1912 at 2026.060 kb on - strand, within HP15_1912 at 2026.278 kb on - strand, within HP15_1912 at 2026.488 kb on - strand, within HP15_1912 at 2026.682 kb on + strand at 2026.687 kb on + strand at 2026.813 kb on - strand at 2026.826 kb on + strand at 2026.916 kb on - strand, within HP15_1913 at 2027.022 kb on - strand, within HP15_1913 at 2027.048 kb on + strand, within HP15_1913 at 2027.124 kb on - strand, within HP15_1913 at 2027.133 kb on - strand, within HP15_1913 at 2027.148 kb on + strand, within HP15_1913 at 2027.296 kb on - strand, within HP15_1913 at 2027.350 kb on + strand, within HP15_1913 at 2027.355 kb on + strand, within HP15_1913 at 2027.358 kb on - strand, within HP15_1913 at 2027.399 kb on - strand, within HP15_1913 at 2027.491 kb on + strand, within HP15_1913 at 2027.501 kb on - strand, within HP15_1913 at 2027.506 kb on - strand, within HP15_1913 at 2027.542 kb on - strand at 2027.617 kb on + strand, within HP15_1913 at 2027.625 kb on - strand, within HP15_1913 at 2027.652 kb on - strand, within HP15_1913 at 2027.726 kb on - strand, within HP15_1913
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 2,024,663 - HP15_1911 0.73 +1.7 2,024,751 + HP15_1911 0.78 -0.8 2,024,773 - HP15_1911 0.79 +2.0 2,024,813 - HP15_1911 0.81 +0.9 2,025,078 - -1.5 2,025,098 + -0.6 2,025,177 - +1.6 2,025,439 - +1.6 2,025,522 + +0.8 2,025,522 + -2.4 2,025,534 + -1.0 2,025,544 + +0.7 2,025,643 - -0.4 2,025,707 - -0.4 2,025,783 + HP15_1912 0.13 +1.4 2,025,791 - HP15_1912 0.14 +1.9 2,025,813 + HP15_1912 0.16 -0.6 2,025,927 + HP15_1912 0.26 -0.9 2,025,946 + HP15_1912 0.27 +1.9 2,026,018 + HP15_1912 0.34 +0.2 2,026,036 - HP15_1912 0.35 +3.4 2,026,052 + HP15_1912 0.37 -0.5 2,026,060 - HP15_1912 0.37 +0.3 2,026,278 - HP15_1912 0.56 -0.4 2,026,488 - HP15_1912 0.74 +2.0 2,026,682 + -0.7 2,026,687 + -0.0 2,026,813 - +0.1 2,026,826 + +1.7 2,026,916 - HP15_1913 0.11 -0.2 2,027,022 - HP15_1913 0.20 +1.4 2,027,048 + HP15_1913 0.22 -0.3 2,027,124 - HP15_1913 0.29 +1.7 2,027,133 - HP15_1913 0.30 -0.4 2,027,148 + HP15_1913 0.31 -0.3 2,027,296 - HP15_1913 0.44 -0.9 2,027,350 + HP15_1913 0.49 +1.7 2,027,355 + HP15_1913 0.50 -0.3 2,027,358 - HP15_1913 0.50 +1.6 2,027,399 - HP15_1913 0.54 +1.7 2,027,491 + HP15_1913 0.62 -0.5 2,027,501 - HP15_1913 0.63 -1.1 2,027,506 - HP15_1913 0.63 +0.7 2,027,542 - +0.5 2,027,617 + HP15_1913 0.73 -0.3 2,027,625 - HP15_1913 0.74 +1.9 2,027,652 - HP15_1913 0.76 +1.6 2,027,726 - HP15_1913 0.83 +0.5
Or see this region's nucleotide sequence