Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1472 and HP15_1473 are separated by 19 nucleotides HP15_1473 and HP15_1474 overlap by 4 nucleotides HP15_1474 and HP15_1475 are separated by 8 nucleotides
HP15_1472: HP15_1472 - flagellar basal-body rod protein FlgG, at 1,547,006 to 1,547,794
_1472
HP15_1473: HP15_1473 - flagellar basal body L-ring protein, at 1,547,814 to 1,548,515
_1473
HP15_1474: HP15_1474 - flagellar P-ring protein precursor I, at 1,548,512 to 1,549,609
_1474
HP15_1475: HP15_1475 - flagellar rod assembly protein/muramidase FlgJ, at 1,549,618 to 1,550,604
_1475
Position (kb)
1548
1549
1550 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1547.560 kb on - strand, within HP15_1472 at 1547.578 kb on + strand, within HP15_1472 at 1547.596 kb on - strand, within HP15_1472 at 1547.637 kb on - strand, within HP15_1472 at 1547.651 kb on - strand, within HP15_1472 at 1547.668 kb on + strand, within HP15_1472 at 1547.673 kb on + strand, within HP15_1472 at 1547.733 kb on + strand at 1547.785 kb on - strand at 1547.830 kb on + strand at 1547.831 kb on + strand at 1547.839 kb on - strand at 1547.922 kb on + strand, within HP15_1473 at 1547.930 kb on - strand, within HP15_1473 at 1547.940 kb on - strand, within HP15_1473 at 1547.968 kb on - strand, within HP15_1473 at 1548.064 kb on + strand, within HP15_1473 at 1548.326 kb on + strand, within HP15_1473 at 1548.347 kb on - strand, within HP15_1473 at 1548.365 kb on - strand, within HP15_1473 at 1548.375 kb on - strand, within HP15_1473 at 1548.442 kb on - strand, within HP15_1473 at 1548.547 kb on - strand at 1548.609 kb on - strand at 1548.907 kb on + strand, within HP15_1474 at 1548.907 kb on + strand, within HP15_1474 at 1548.915 kb on - strand, within HP15_1474 at 1548.915 kb on - strand, within HP15_1474 at 1548.920 kb on + strand, within HP15_1474 at 1548.928 kb on - strand, within HP15_1474 at 1548.928 kb on - strand, within HP15_1474 at 1548.928 kb on - strand, within HP15_1474 at 1548.928 kb on - strand, within HP15_1474 at 1548.938 kb on - strand, within HP15_1474 at 1548.954 kb on + strand, within HP15_1474 at 1548.996 kb on + strand, within HP15_1474 at 1549.036 kb on - strand, within HP15_1474 at 1549.065 kb on - strand, within HP15_1474 at 1549.071 kb on - strand, within HP15_1474 at 1549.073 kb on - strand, within HP15_1474 at 1549.103 kb on + strand, within HP15_1474 at 1549.122 kb on - strand, within HP15_1474 at 1549.159 kb on - strand, within HP15_1474 at 1549.205 kb on - strand, within HP15_1474 at 1549.316 kb on + strand, within HP15_1474 at 1549.324 kb on - strand, within HP15_1474 at 1549.362 kb on - strand, within HP15_1474 at 1549.383 kb on - strand, within HP15_1474 at 1549.414 kb on + strand at 1549.587 kb on + strand at 1549.606 kb on - strand at 1549.618 kb on + strand at 1549.631 kb on - strand at 1549.641 kb on + strand at 1549.647 kb on + strand at 1549.655 kb on - strand at 1549.655 kb on - strand at 1549.667 kb on + strand at 1549.675 kb on - strand at 1549.684 kb on + strand at 1549.692 kb on - strand at 1549.697 kb on - strand at 1549.699 kb on + strand at 1549.707 kb on - strand at 1549.707 kb on - strand at 1549.707 kb on - strand at 1549.707 kb on - strand at 1549.722 kb on - strand, within HP15_1475 at 1549.866 kb on + strand, within HP15_1475 at 1549.892 kb on + strand, within HP15_1475 at 1549.987 kb on + strand, within HP15_1475 at 1550.081 kb on + strand, within HP15_1475 at 1550.135 kb on - strand, within HP15_1475 at 1550.264 kb on + strand, within HP15_1475 at 1550.272 kb on - strand, within HP15_1475 at 1550.272 kb on - strand, within HP15_1475 at 1550.272 kb on - strand, within HP15_1475 at 1550.344 kb on + strand, within HP15_1475 at 1550.354 kb on + strand, within HP15_1475 at 1550.515 kb on + strand at 1550.599 kb on + strand at 1550.606 kb on + strand at 1550.606 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 1,547,560 - HP15_1472 0.70 +1.3 1,547,578 + HP15_1472 0.72 +2.7 1,547,596 - HP15_1472 0.75 +2.5 1,547,637 - HP15_1472 0.80 +1.8 1,547,651 - HP15_1472 0.82 +1.8 1,547,668 + HP15_1472 0.84 +1.3 1,547,673 + HP15_1472 0.85 +1.6 1,547,733 + +2.1 1,547,785 - +1.7 1,547,830 + +1.1 1,547,831 + +0.7 1,547,839 - +1.7 1,547,922 + HP15_1473 0.15 +2.2 1,547,930 - HP15_1473 0.17 +1.7 1,547,940 - HP15_1473 0.18 +1.7 1,547,968 - HP15_1473 0.22 +1.7 1,548,064 + HP15_1473 0.36 +1.4 1,548,326 + HP15_1473 0.73 +1.6 1,548,347 - HP15_1473 0.76 +1.6 1,548,365 - HP15_1473 0.78 +1.7 1,548,375 - HP15_1473 0.80 +0.7 1,548,442 - HP15_1473 0.89 +1.9 1,548,547 - +2.1 1,548,609 - +1.6 1,548,907 + HP15_1474 0.36 +1.9 1,548,907 + HP15_1474 0.36 +1.5 1,548,915 - HP15_1474 0.37 +1.4 1,548,915 - HP15_1474 0.37 +1.6 1,548,920 + HP15_1474 0.37 +1.7 1,548,928 - HP15_1474 0.38 +1.8 1,548,928 - HP15_1474 0.38 +1.5 1,548,928 - HP15_1474 0.38 +1.4 1,548,928 - HP15_1474 0.38 +1.8 1,548,938 - HP15_1474 0.39 +1.3 1,548,954 + HP15_1474 0.40 +1.7 1,548,996 + HP15_1474 0.44 +1.9 1,549,036 - HP15_1474 0.48 +1.3 1,549,065 - HP15_1474 0.50 +2.5 1,549,071 - HP15_1474 0.51 +1.8 1,549,073 - HP15_1474 0.51 +1.9 1,549,103 + HP15_1474 0.54 +1.7 1,549,122 - HP15_1474 0.56 +1.8 1,549,159 - HP15_1474 0.59 +1.6 1,549,205 - HP15_1474 0.63 +2.1 1,549,316 + HP15_1474 0.73 +2.0 1,549,324 - HP15_1474 0.74 +1.5 1,549,362 - HP15_1474 0.77 +1.6 1,549,383 - HP15_1474 0.79 +1.7 1,549,414 + +3.3 1,549,587 + +1.4 1,549,606 - +1.7 1,549,618 + -0.2 1,549,631 - +1.5 1,549,641 + +0.6 1,549,647 + +0.7 1,549,655 - +1.7 1,549,655 - +1.7 1,549,667 + +1.7 1,549,675 - +1.7 1,549,684 + +1.9 1,549,692 - +2.1 1,549,697 - +1.5 1,549,699 + +2.0 1,549,707 - +1.7 1,549,707 - +2.4 1,549,707 - +1.5 1,549,707 - +1.6 1,549,722 - HP15_1475 0.11 +1.5 1,549,866 + HP15_1475 0.25 +2.0 1,549,892 + HP15_1475 0.28 +1.6 1,549,987 + HP15_1475 0.37 +1.7 1,550,081 + HP15_1475 0.47 +1.6 1,550,135 - HP15_1475 0.52 +1.6 1,550,264 + HP15_1475 0.65 +0.6 1,550,272 - HP15_1475 0.66 +1.7 1,550,272 - HP15_1475 0.66 +1.3 1,550,272 - HP15_1475 0.66 +1.5 1,550,344 + HP15_1475 0.74 +1.6 1,550,354 + HP15_1475 0.75 +0.9 1,550,515 + +2.0 1,550,599 + +1.7 1,550,606 + +1.4 1,550,606 + +1.3
Or see this region's nucleotide sequence