Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c13140

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c13130 and PGA1_c13140 are separated by 45 nucleotidesPGA1_c13140 and PGA1_c13150 are separated by 103 nucleotides PGA1_c13130: PGA1_c13130 - TRAP transporter, subunit DctM, at 1,357,033 to 1,358,508 _c13130 PGA1_c13140: PGA1_c13140 - putative TRAP transporter extracellular solute binding protein, family 7, at 1,358,554 to 1,359,612 _c13140 PGA1_c13150: PGA1_c13150 - di-haem cytochrome c peroxidase-like protein, at 1,359,716 to 1,361,515 _c13150 Position (kb) 1358 1359 1360Strain fitness (log2 ratio) -2 -1 0 1 2at 1357.565 kb on + strand, within PGA1_c13130at 1357.577 kb on + strand, within PGA1_c13130at 1357.585 kb on - strand, within PGA1_c13130at 1357.655 kb on + strand, within PGA1_c13130at 1357.714 kb on + strand, within PGA1_c13130at 1357.886 kb on + strand, within PGA1_c13130at 1357.894 kb on - strand, within PGA1_c13130at 1358.107 kb on - strand, within PGA1_c13130at 1358.313 kb on + strand, within PGA1_c13130at 1358.313 kb on + strand, within PGA1_c13130at 1358.332 kb on + strand, within PGA1_c13130at 1358.361 kb on + strandat 1358.372 kb on + strandat 1358.397 kb on + strandat 1358.453 kb on + strandat 1358.590 kb on + strandat 1358.590 kb on + strandat 1358.590 kb on + strandat 1358.590 kb on + strandat 1358.598 kb on - strandat 1358.611 kb on - strandat 1358.629 kb on + strandat 1358.674 kb on + strand, within PGA1_c13140at 1358.682 kb on - strand, within PGA1_c13140at 1358.682 kb on - strand, within PGA1_c13140at 1358.684 kb on + strand, within PGA1_c13140at 1358.684 kb on + strand, within PGA1_c13140at 1358.692 kb on - strand, within PGA1_c13140at 1358.692 kb on - strand, within PGA1_c13140at 1358.692 kb on - strand, within PGA1_c13140at 1358.692 kb on - strand, within PGA1_c13140at 1358.692 kb on - strand, within PGA1_c13140at 1358.735 kb on + strand, within PGA1_c13140at 1358.768 kb on - strand, within PGA1_c13140at 1358.840 kb on + strand, within PGA1_c13140at 1358.840 kb on + strand, within PGA1_c13140at 1358.850 kb on + strand, within PGA1_c13140at 1358.853 kb on - strand, within PGA1_c13140at 1358.858 kb on - strand, within PGA1_c13140at 1358.858 kb on - strand, within PGA1_c13140at 1358.863 kb on - strand, within PGA1_c13140at 1358.866 kb on + strand, within PGA1_c13140at 1358.872 kb on + strand, within PGA1_c13140at 1359.065 kb on - strand, within PGA1_c13140at 1359.072 kb on - strand, within PGA1_c13140at 1359.108 kb on + strand, within PGA1_c13140at 1359.128 kb on + strand, within PGA1_c13140at 1359.136 kb on - strand, within PGA1_c13140at 1359.146 kb on + strand, within PGA1_c13140at 1359.146 kb on + strand, within PGA1_c13140at 1359.146 kb on + strand, within PGA1_c13140at 1359.149 kb on - strand, within PGA1_c13140at 1359.154 kb on - strand, within PGA1_c13140at 1359.164 kb on - strand, within PGA1_c13140at 1359.180 kb on + strand, within PGA1_c13140at 1359.181 kb on + strand, within PGA1_c13140at 1359.198 kb on - strand, within PGA1_c13140at 1359.217 kb on + strand, within PGA1_c13140at 1359.248 kb on + strand, within PGA1_c13140at 1359.275 kb on - strand, within PGA1_c13140at 1359.293 kb on - strand, within PGA1_c13140at 1359.305 kb on - strand, within PGA1_c13140at 1359.344 kb on - strand, within PGA1_c13140at 1359.359 kb on - strand, within PGA1_c13140at 1359.400 kb on + strand, within PGA1_c13140at 1359.400 kb on + strand, within PGA1_c13140at 1359.545 kb on + strandat 1359.549 kb on + strandat 1359.614 kb on - strandat 1359.651 kb on - strandat 1359.656 kb on - strandat 1359.656 kb on - strandat 1359.686 kb on + strandat 1359.686 kb on + strandat 1359.687 kb on + strandat 1359.715 kb on - strandat 1359.822 kb on - strandat 1359.843 kb on + strandat 1359.957 kb on - strand, within PGA1_c13150at 1359.969 kb on - strand, within PGA1_c13150at 1360.059 kb on + strand, within PGA1_c13150at 1360.059 kb on + strand, within PGA1_c13150at 1360.128 kb on + strand, within PGA1_c13150at 1360.136 kb on - strand, within PGA1_c13150at 1360.136 kb on - strand, within PGA1_c13150at 1360.136 kb on - strand, within PGA1_c13150at 1360.136 kb on - strand, within PGA1_c13150at 1360.183 kb on + strand, within PGA1_c13150at 1360.185 kb on + strand, within PGA1_c13150at 1360.185 kb on + strand, within PGA1_c13150at 1360.191 kb on - strand, within PGA1_c13150at 1360.196 kb on - strand, within PGA1_c13150at 1360.286 kb on - strand, within PGA1_c13150at 1360.286 kb on - strand, within PGA1_c13150at 1360.364 kb on - strand, within PGA1_c13150at 1360.412 kb on + strand, within PGA1_c13150at 1360.510 kb on + strand, within PGA1_c13150at 1360.510 kb on + strand, within PGA1_c13150at 1360.547 kb on + strand, within PGA1_c13150at 1360.552 kb on + strand, within PGA1_c13150at 1360.560 kb on - strand, within PGA1_c13150at 1360.560 kb on - strand, within PGA1_c13150

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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1,357,565 + PGA1_c13130 0.36 +0.1
1,357,577 + PGA1_c13130 0.37 +0.3
1,357,585 - PGA1_c13130 0.37 +0.1
1,357,655 + PGA1_c13130 0.42 -0.5
1,357,714 + PGA1_c13130 0.46 -0.4
1,357,886 + PGA1_c13130 0.58 +0.3
1,357,894 - PGA1_c13130 0.58 +1.1
1,358,107 - PGA1_c13130 0.73 +0.3
1,358,313 + PGA1_c13130 0.87 -0.3
1,358,313 + PGA1_c13130 0.87 +1.1
1,358,332 + PGA1_c13130 0.88 +0.7
1,358,361 + -1.0
1,358,372 + +0.7
1,358,397 + -0.7
1,358,453 + -0.3
1,358,590 + -0.1
1,358,590 + +1.4
1,358,590 + -0.4
1,358,590 + +0.1
1,358,598 - -0.4
1,358,611 - +0.1
1,358,629 + -0.3
1,358,674 + PGA1_c13140 0.11 -0.6
1,358,682 - PGA1_c13140 0.12 +0.3
1,358,682 - PGA1_c13140 0.12 -1.0
1,358,684 + PGA1_c13140 0.12 -1.5
1,358,684 + PGA1_c13140 0.12 -0.1
1,358,692 - PGA1_c13140 0.13 +1.9
1,358,692 - PGA1_c13140 0.13 -0.2
1,358,692 - PGA1_c13140 0.13 +0.1
1,358,692 - PGA1_c13140 0.13 -0.6
1,358,692 - PGA1_c13140 0.13 +0.3
1,358,735 + PGA1_c13140 0.17 -1.0
1,358,768 - PGA1_c13140 0.20 +1.1
1,358,840 + PGA1_c13140 0.27 +0.1
1,358,840 + PGA1_c13140 0.27 -0.7
1,358,850 + PGA1_c13140 0.28 -0.0
1,358,853 - PGA1_c13140 0.28 +0.3
1,358,858 - PGA1_c13140 0.29 +0.0
1,358,858 - PGA1_c13140 0.29 +0.4
1,358,863 - PGA1_c13140 0.29 +1.1
1,358,866 + PGA1_c13140 0.29 +0.1
1,358,872 + PGA1_c13140 0.30 -0.5
1,359,065 - PGA1_c13140 0.48 -0.1
1,359,072 - PGA1_c13140 0.49 -0.8
1,359,108 + PGA1_c13140 0.52 +0.3
1,359,128 + PGA1_c13140 0.54 -0.3
1,359,136 - PGA1_c13140 0.55 -0.2
1,359,146 + PGA1_c13140 0.56 -1.0
1,359,146 + PGA1_c13140 0.56 +0.2
1,359,146 + PGA1_c13140 0.56 +0.2
1,359,149 - PGA1_c13140 0.56 -0.1
1,359,154 - PGA1_c13140 0.57 -0.4
1,359,164 - PGA1_c13140 0.58 +0.1
1,359,180 + PGA1_c13140 0.59 +0.3
1,359,181 + PGA1_c13140 0.59 -0.1
1,359,198 - PGA1_c13140 0.61 +0.1
1,359,217 + PGA1_c13140 0.63 -0.3
1,359,248 + PGA1_c13140 0.66 -0.7
1,359,275 - PGA1_c13140 0.68 -0.6
1,359,293 - PGA1_c13140 0.70 -0.1
1,359,305 - PGA1_c13140 0.71 -0.9
1,359,344 - PGA1_c13140 0.75 +0.2
1,359,359 - PGA1_c13140 0.76 +0.7
1,359,400 + PGA1_c13140 0.80 +0.3
1,359,400 + PGA1_c13140 0.80 +0.6
1,359,545 + +0.9
1,359,549 + -0.4
1,359,614 - -0.2
1,359,651 - -0.4
1,359,656 - -0.0
1,359,656 - -0.4
1,359,686 + +2.4
1,359,686 + +0.5
1,359,687 + -0.6
1,359,715 - +0.2
1,359,822 - +0.7
1,359,843 + -0.9
1,359,957 - PGA1_c13150 0.13 +0.6
1,359,969 - PGA1_c13150 0.14 -2.3
1,360,059 + PGA1_c13150 0.19 +0.7
1,360,059 + PGA1_c13150 0.19 +0.0
1,360,128 + PGA1_c13150 0.23 +0.2
1,360,136 - PGA1_c13150 0.23 -0.5
1,360,136 - PGA1_c13150 0.23 +0.2
1,360,136 - PGA1_c13150 0.23 -0.1
1,360,136 - PGA1_c13150 0.23 -0.8
1,360,183 + PGA1_c13150 0.26 +0.6
1,360,185 + PGA1_c13150 0.26 +0.5
1,360,185 + PGA1_c13150 0.26 -0.1
1,360,191 - PGA1_c13150 0.26 +1.3
1,360,196 - PGA1_c13150 0.27 +0.6
1,360,286 - PGA1_c13150 0.32 -0.1
1,360,286 - PGA1_c13150 0.32 +0.3
1,360,364 - PGA1_c13150 0.36 +0.3
1,360,412 + PGA1_c13150 0.39 -1.2
1,360,510 + PGA1_c13150 0.44 -0.8
1,360,510 + PGA1_c13150 0.44 +0.5
1,360,547 + PGA1_c13150 0.46 +0.5
1,360,552 + PGA1_c13150 0.46 +0.7
1,360,560 - PGA1_c13150 0.47 -0.4
1,360,560 - PGA1_c13150 0.47 +0.2

Or see this region's nucleotide sequence