Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04750 and PGA1_c04760 are separated by 5 nucleotides PGA1_c04760 and PGA1_c04770 overlap by 4 nucleotides PGA1_c04770 and PGA1_c04780 are separated by 116 nucleotides
PGA1_c04750: PGA1_c04750 - metalloprotein, YbeY/UPF0054 family, at 466,759 to 467,289
_c04750
PGA1_c04760: PGA1_c04760 - magnesium and cobalt efflux protein corC-like protein, at 467,295 to 468,194
_c04760
PGA1_c04770: PGA1_c04770 - apolipoprotein N-acyltransferase Int, at 468,191 to 469,702
_c04770
PGA1_c04780: PGA1_c04780 - S-adenosylmethionine synthetase MetK, at 469,819 to 471,000
_c04780
Position (kb) 468
469
470 Strain fitness (log2 ratio) -1
0
1
2 at 467.244 kb on + strand at 467.260 kb on - strand at 467.350 kb on - strand at 467.368 kb on - strand at 468.192 kb on - strand at 469.685 kb on - strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.703 kb on - strand at 469.703 kb on - strand at 469.711 kb on + strand at 469.744 kb on + strand at 469.795 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 467,244 + +0.6 467,260 - +0.9 467,350 - -0.1 467,368 - +0.5 468,192 - +2.0 469,685 - -0.9 469,695 + +0.4 469,695 + -0.7 469,695 + -0.9 469,695 + +0.2 469,695 + -0.1 469,695 + +0.2 469,695 + -0.2 469,695 + +0.7 469,695 + +0.5 469,695 + -1.0 469,695 + -0.5 469,695 + -1.1 469,695 + -0.6 469,695 + +0.1 469,703 - -1.3 469,703 - +0.8 469,711 + -0.9 469,744 + +0.7 469,795 + +0.3
Or see this region's nucleotide sequence