Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p02120 and PGA1_262p02130 are separated by 1 nucleotides PGA1_262p02130 and PGA1_262p02140 overlap by 4 nucleotides PGA1_262p02140 and PGA1_262p02150 are separated by 273 nucleotides
PGA1_262p02120: PGA1_262p02120 - chemotaxis protein CheA, at 228,230 to 230,365
_262p02120
PGA1_262p02130: PGA1_262p02130 - response regulator receiver, at 230,367 to 230,741
_262p02130
PGA1_262p02140: PGA1_262p02140 - hypothetical protein, at 230,738 to 231,142
_262p02140
PGA1_262p02150: PGA1_262p02150 - methyl-accepting chemotaxis protein I, at 231,416 to 233,815
_262p02150
Position (kb) 230
231
232 Strain fitness (log2 ratio) -2
-1
0
1 at 229.742 kb on + strand, within PGA1_262p02120 at 229.771 kb on + strand, within PGA1_262p02120 at 229.794 kb on - strand, within PGA1_262p02120 at 229.803 kb on - strand, within PGA1_262p02120 at 229.807 kb on + strand, within PGA1_262p02120 at 229.815 kb on - strand, within PGA1_262p02120 at 229.833 kb on + strand, within PGA1_262p02120 at 229.899 kb on + strand, within PGA1_262p02120 at 229.899 kb on + strand, within PGA1_262p02120 at 229.899 kb on + strand, within PGA1_262p02120 at 229.899 kb on + strand, within PGA1_262p02120 at 229.899 kb on + strand, within PGA1_262p02120 at 229.899 kb on + strand, within PGA1_262p02120 at 229.899 kb on + strand, within PGA1_262p02120 at 229.907 kb on - strand, within PGA1_262p02120 at 229.907 kb on - strand, within PGA1_262p02120 at 229.907 kb on - strand, within PGA1_262p02120 at 229.907 kb on - strand, within PGA1_262p02120 at 229.907 kb on - strand, within PGA1_262p02120 at 229.958 kb on - strand, within PGA1_262p02120 at 230.002 kb on + strand, within PGA1_262p02120 at 230.046 kb on - strand, within PGA1_262p02120 at 230.268 kb on - strand at 230.268 kb on - strand at 230.268 kb on - strand at 230.268 kb on - strand at 230.268 kb on - strand at 230.292 kb on + strand at 230.300 kb on - strand at 230.477 kb on - strand, within PGA1_262p02130 at 230.533 kb on + strand, within PGA1_262p02130 at 230.552 kb on + strand, within PGA1_262p02130 at 230.552 kb on + strand, within PGA1_262p02130 at 230.560 kb on - strand, within PGA1_262p02130 at 230.560 kb on - strand, within PGA1_262p02130 at 230.560 kb on - strand, within PGA1_262p02130 at 230.560 kb on - strand, within PGA1_262p02130 at 230.560 kb on - strand, within PGA1_262p02130 at 230.597 kb on - strand, within PGA1_262p02130 at 230.622 kb on + strand, within PGA1_262p02130 at 230.622 kb on + strand, within PGA1_262p02130 at 230.630 kb on - strand, within PGA1_262p02130 at 230.640 kb on + strand, within PGA1_262p02130 at 230.645 kb on - strand, within PGA1_262p02130 at 230.655 kb on - strand, within PGA1_262p02130 at 230.672 kb on + strand, within PGA1_262p02130 at 230.865 kb on - strand, within PGA1_262p02140 at 230.875 kb on + strand, within PGA1_262p02140 at 230.883 kb on - strand, within PGA1_262p02140 at 230.928 kb on + strand, within PGA1_262p02140 at 230.928 kb on + strand, within PGA1_262p02140 at 230.928 kb on + strand, within PGA1_262p02140 at 230.936 kb on - strand, within PGA1_262p02140 at 230.952 kb on + strand, within PGA1_262p02140 at 230.979 kb on - strand, within PGA1_262p02140 at 230.982 kb on + strand, within PGA1_262p02140 at 230.982 kb on + strand, within PGA1_262p02140 at 230.982 kb on + strand, within PGA1_262p02140 at 230.982 kb on + strand, within PGA1_262p02140 at 230.989 kb on - strand, within PGA1_262p02140 at 230.990 kb on - strand, within PGA1_262p02140 at 230.990 kb on - strand, within PGA1_262p02140 at 230.990 kb on - strand, within PGA1_262p02140 at 230.990 kb on - strand, within PGA1_262p02140 at 230.990 kb on - strand, within PGA1_262p02140 at 230.990 kb on - strand, within PGA1_262p02140 at 230.990 kb on - strand, within PGA1_262p02140 at 230.992 kb on + strand, within PGA1_262p02140 at 231.000 kb on - strand, within PGA1_262p02140 at 231.000 kb on - strand, within PGA1_262p02140 at 231.000 kb on - strand, within PGA1_262p02140 at 231.000 kb on - strand, within PGA1_262p02140 at 231.000 kb on - strand, within PGA1_262p02140 at 231.000 kb on - strand, within PGA1_262p02140 at 231.000 kb on - strand, within PGA1_262p02140 at 231.000 kb on - strand, within PGA1_262p02140 at 231.067 kb on - strand, within PGA1_262p02140 at 231.075 kb on + strand, within PGA1_262p02140 at 231.213 kb on + strand at 231.245 kb on - strand at 231.250 kb on + strand at 231.252 kb on + strand at 231.272 kb on + strand at 231.279 kb on - strand at 231.282 kb on - strand at 231.371 kb on - strand at 231.371 kb on - strand at 231.381 kb on + strand at 231.389 kb on - strand at 231.402 kb on + strand at 231.402 kb on + strand at 231.455 kb on + strand at 231.458 kb on - strand at 231.478 kb on - strand at 231.505 kb on + strand at 231.518 kb on - strand at 231.570 kb on - strand at 231.585 kb on - strand at 231.632 kb on - strand at 231.632 kb on - strand at 231.638 kb on - strand at 231.643 kb on + strand at 231.669 kb on + strand, within PGA1_262p02150 at 231.681 kb on + strand, within PGA1_262p02150 at 231.691 kb on + strand, within PGA1_262p02150 at 231.699 kb on - strand, within PGA1_262p02150 at 231.699 kb on - strand, within PGA1_262p02150 at 231.724 kb on + strand, within PGA1_262p02150 at 231.734 kb on - strand, within PGA1_262p02150 at 231.800 kb on + strand, within PGA1_262p02150 at 231.808 kb on - strand, within PGA1_262p02150 at 231.817 kb on + strand, within PGA1_262p02150 at 231.825 kb on - strand, within PGA1_262p02150 at 231.842 kb on + strand, within PGA1_262p02150 at 231.850 kb on - strand, within PGA1_262p02150 at 231.882 kb on - strand, within PGA1_262p02150 at 231.898 kb on - strand, within PGA1_262p02150 at 231.927 kb on + strand, within PGA1_262p02150 at 231.935 kb on - strand, within PGA1_262p02150 at 231.935 kb on - strand, within PGA1_262p02150 at 231.937 kb on + strand, within PGA1_262p02150 at 231.982 kb on - strand, within PGA1_262p02150
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 229,742 + PGA1_262p02120 0.71 -0.6 229,771 + PGA1_262p02120 0.72 +0.9 229,794 - PGA1_262p02120 0.73 +0.5 229,803 - PGA1_262p02120 0.74 +1.2 229,807 + PGA1_262p02120 0.74 +0.5 229,815 - PGA1_262p02120 0.74 -2.4 229,833 + PGA1_262p02120 0.75 +0.7 229,899 + PGA1_262p02120 0.78 +0.1 229,899 + PGA1_262p02120 0.78 -0.2 229,899 + PGA1_262p02120 0.78 -2.0 229,899 + PGA1_262p02120 0.78 -0.0 229,899 + PGA1_262p02120 0.78 -0.6 229,899 + PGA1_262p02120 0.78 -2.4 229,899 + PGA1_262p02120 0.78 -0.9 229,907 - PGA1_262p02120 0.79 +1.0 229,907 - PGA1_262p02120 0.79 +0.0 229,907 - PGA1_262p02120 0.79 +1.2 229,907 - PGA1_262p02120 0.79 +0.6 229,907 - PGA1_262p02120 0.79 +0.4 229,958 - PGA1_262p02120 0.81 -0.6 230,002 + PGA1_262p02120 0.83 -0.6 230,046 - PGA1_262p02120 0.85 -1.2 230,268 - +0.4 230,268 - -1.0 230,268 - +0.6 230,268 - +0.3 230,268 - +0.3 230,292 + +0.8 230,300 - -1.5 230,477 - PGA1_262p02130 0.29 +1.0 230,533 + PGA1_262p02130 0.44 +0.6 230,552 + PGA1_262p02130 0.49 -0.9 230,552 + PGA1_262p02130 0.49 -0.0 230,560 - PGA1_262p02130 0.51 -0.6 230,560 - PGA1_262p02130 0.51 +0.6 230,560 - PGA1_262p02130 0.51 -0.2 230,560 - PGA1_262p02130 0.51 -1.8 230,560 - PGA1_262p02130 0.51 +0.2 230,597 - PGA1_262p02130 0.61 -1.7 230,622 + PGA1_262p02130 0.68 +1.2 230,622 + PGA1_262p02130 0.68 +0.7 230,630 - PGA1_262p02130 0.70 -0.0 230,640 + PGA1_262p02130 0.73 +0.0 230,645 - PGA1_262p02130 0.74 +0.4 230,655 - PGA1_262p02130 0.77 -1.2 230,672 + PGA1_262p02130 0.81 -0.7 230,865 - PGA1_262p02140 0.31 +0.3 230,875 + PGA1_262p02140 0.34 +0.6 230,883 - PGA1_262p02140 0.36 -1.1 230,928 + PGA1_262p02140 0.47 -0.4 230,928 + PGA1_262p02140 0.47 -0.4 230,928 + PGA1_262p02140 0.47 +0.6 230,936 - PGA1_262p02140 0.49 -0.3 230,952 + PGA1_262p02140 0.53 -1.2 230,979 - PGA1_262p02140 0.60 +0.6 230,982 + PGA1_262p02140 0.60 -1.0 230,982 + PGA1_262p02140 0.60 -1.4 230,982 + PGA1_262p02140 0.60 +0.2 230,982 + PGA1_262p02140 0.60 +0.8 230,989 - PGA1_262p02140 0.62 -0.6 230,990 - PGA1_262p02140 0.62 -0.3 230,990 - PGA1_262p02140 0.62 -0.7 230,990 - PGA1_262p02140 0.62 -1.7 230,990 - PGA1_262p02140 0.62 -1.1 230,990 - PGA1_262p02140 0.62 +0.7 230,990 - PGA1_262p02140 0.62 -2.4 230,990 - PGA1_262p02140 0.62 +0.3 230,992 + PGA1_262p02140 0.63 -0.5 231,000 - PGA1_262p02140 0.65 -0.4 231,000 - PGA1_262p02140 0.65 -1.2 231,000 - PGA1_262p02140 0.65 -0.3 231,000 - PGA1_262p02140 0.65 -1.4 231,000 - PGA1_262p02140 0.65 -0.1 231,000 - PGA1_262p02140 0.65 -0.3 231,000 - PGA1_262p02140 0.65 +0.3 231,000 - PGA1_262p02140 0.65 -0.6 231,067 - PGA1_262p02140 0.81 +0.0 231,075 + PGA1_262p02140 0.83 +0.1 231,213 + +0.0 231,245 - +0.4 231,250 + -0.8 231,252 + +0.1 231,272 + -0.9 231,279 - +0.1 231,282 - -1.3 231,371 - +1.5 231,371 - -0.3 231,381 + +0.2 231,389 - +1.4 231,402 + +0.5 231,402 + +0.6 231,455 + +0.1 231,458 - +0.6 231,478 - -0.1 231,505 + -1.6 231,518 - +0.7 231,570 - +0.3 231,585 - +0.0 231,632 - -0.8 231,632 - +1.0 231,638 - -0.0 231,643 + -2.1 231,669 + PGA1_262p02150 0.11 -0.1 231,681 + PGA1_262p02150 0.11 +0.6 231,691 + PGA1_262p02150 0.11 -0.4 231,699 - PGA1_262p02150 0.12 -0.2 231,699 - PGA1_262p02150 0.12 +0.7 231,724 + PGA1_262p02150 0.13 +0.2 231,734 - PGA1_262p02150 0.13 -0.4 231,800 + PGA1_262p02150 0.16 +0.9 231,808 - PGA1_262p02150 0.16 +0.2 231,817 + PGA1_262p02150 0.17 +0.5 231,825 - PGA1_262p02150 0.17 -0.6 231,842 + PGA1_262p02150 0.18 -0.6 231,850 - PGA1_262p02150 0.18 -0.8 231,882 - PGA1_262p02150 0.19 -1.5 231,898 - PGA1_262p02150 0.20 -0.4 231,927 + PGA1_262p02150 0.21 -1.4 231,935 - PGA1_262p02150 0.22 -1.6 231,935 - PGA1_262p02150 0.22 +0.3 231,937 + PGA1_262p02150 0.22 +0.8 231,982 - PGA1_262p02150 0.24 -0.8
Or see this region's nucleotide sequence