Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p01720

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p01700 and PGA1_262p01710 are separated by 15 nucleotidesPGA1_262p01710 and PGA1_262p01720 are separated by 12 nucleotidesPGA1_262p01720 and PGA1_262p01730 overlap by 4 nucleotidesPGA1_262p01730 and PGA1_262p01740 overlap by 4 nucleotides PGA1_262p01700: PGA1_262p01700 - putative ABC transporter, solute-binding protein, at 186,439 to 187,989 _262p01700 PGA1_262p01710: PGA1_262p01710 - putative glutathione transport system permease protein, at 188,005 to 188,943 _262p01710 PGA1_262p01720: PGA1_262p01720 - putative glutathione transport system permease protein, at 188,956 to 189,834 _262p01720 PGA1_262p01730: PGA1_262p01730 - putative glutathione import ATP-binding protein, at 189,831 to 190,808 _262p01730 PGA1_262p01740: PGA1_262p01740 - putative peptide ABC transporter, ATP-binding protein, at 190,805 to 191,734 _262p01740 Position (kb) 188 189 190Strain fitness (log2 ratio) -2 -1 0 1 2at 187.984 kb on + strandat 188.117 kb on + strand, within PGA1_262p01710at 188.176 kb on + strand, within PGA1_262p01710at 188.322 kb on + strand, within PGA1_262p01710at 188.405 kb on + strand, within PGA1_262p01710at 188.449 kb on + strand, within PGA1_262p01710at 188.457 kb on - strand, within PGA1_262p01710at 188.527 kb on + strand, within PGA1_262p01710at 188.641 kb on + strand, within PGA1_262p01710at 188.714 kb on - strand, within PGA1_262p01710at 188.726 kb on + strand, within PGA1_262p01710at 188.980 kb on + strandat 188.988 kb on - strandat 189.046 kb on + strand, within PGA1_262p01720at 189.046 kb on + strand, within PGA1_262p01720at 189.095 kb on + strand, within PGA1_262p01720at 189.173 kb on - strand, within PGA1_262p01720at 189.361 kb on + strand, within PGA1_262p01720at 189.393 kb on + strand, within PGA1_262p01720at 189.474 kb on + strand, within PGA1_262p01720at 189.474 kb on + strand, within PGA1_262p01720at 189.476 kb on + strand, within PGA1_262p01720at 189.476 kb on + strand, within PGA1_262p01720at 189.476 kb on + strand, within PGA1_262p01720at 189.482 kb on - strand, within PGA1_262p01720at 189.482 kb on - strand, within PGA1_262p01720at 189.494 kb on - strand, within PGA1_262p01720at 189.540 kb on + strand, within PGA1_262p01720at 189.540 kb on + strand, within PGA1_262p01720at 189.586 kb on + strand, within PGA1_262p01720at 189.647 kb on + strand, within PGA1_262p01720at 189.685 kb on - strand, within PGA1_262p01720at 189.695 kb on - strand, within PGA1_262p01720at 189.698 kb on + strand, within PGA1_262p01720at 189.825 kb on + strandat 189.835 kb on + strandat 189.893 kb on + strandat 189.899 kb on - strandat 189.899 kb on - strandat 189.940 kb on - strand, within PGA1_262p01730at 189.976 kb on - strand, within PGA1_262p01730at 189.981 kb on - strand, within PGA1_262p01730at 190.051 kb on - strand, within PGA1_262p01730at 190.107 kb on - strand, within PGA1_262p01730at 190.243 kb on - strand, within PGA1_262p01730at 190.311 kb on - strand, within PGA1_262p01730at 190.340 kb on - strand, within PGA1_262p01730at 190.389 kb on - strand, within PGA1_262p01730at 190.471 kb on + strand, within PGA1_262p01730at 190.471 kb on + strand, within PGA1_262p01730at 190.506 kb on + strand, within PGA1_262p01730at 190.574 kb on + strand, within PGA1_262p01730at 190.611 kb on - strand, within PGA1_262p01730at 190.613 kb on + strand, within PGA1_262p01730at 190.620 kb on - strand, within PGA1_262p01730at 190.729 kb on + strandat 190.737 kb on - strandat 190.781 kb on + strandat 190.809 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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187,984 + +1.1
188,117 + PGA1_262p01710 0.12 +0.6
188,176 + PGA1_262p01710 0.18 -0.4
188,322 + PGA1_262p01710 0.34 -0.6
188,405 + PGA1_262p01710 0.43 -1.1
188,449 + PGA1_262p01710 0.47 -1.6
188,457 - PGA1_262p01710 0.48 -0.9
188,527 + PGA1_262p01710 0.56 -1.8
188,641 + PGA1_262p01710 0.68 +0.3
188,714 - PGA1_262p01710 0.76 -0.5
188,726 + PGA1_262p01710 0.77 -0.5
188,980 + -1.1
188,988 - -0.4
189,046 + PGA1_262p01720 0.10 +0.7
189,046 + PGA1_262p01720 0.10 +0.1
189,095 + PGA1_262p01720 0.16 -0.5
189,173 - PGA1_262p01720 0.25 +1.3
189,361 + PGA1_262p01720 0.46 -1.6
189,393 + PGA1_262p01720 0.50 +0.1
189,474 + PGA1_262p01720 0.59 -0.3
189,474 + PGA1_262p01720 0.59 +1.0
189,476 + PGA1_262p01720 0.59 +0.7
189,476 + PGA1_262p01720 0.59 +0.9
189,476 + PGA1_262p01720 0.59 -0.6
189,482 - PGA1_262p01720 0.60 +1.1
189,482 - PGA1_262p01720 0.60 -1.6
189,494 - PGA1_262p01720 0.61 +0.4
189,540 + PGA1_262p01720 0.66 +0.6
189,540 + PGA1_262p01720 0.66 +0.3
189,586 + PGA1_262p01720 0.72 +1.4
189,647 + PGA1_262p01720 0.79 -0.1
189,685 - PGA1_262p01720 0.83 -1.0
189,695 - PGA1_262p01720 0.84 -0.4
189,698 + PGA1_262p01720 0.84 -0.2
189,825 + -1.0
189,835 + +0.7
189,893 + +0.5
189,899 - -1.6
189,899 - -0.8
189,940 - PGA1_262p01730 0.11 +2.0
189,976 - PGA1_262p01730 0.15 +1.2
189,981 - PGA1_262p01730 0.15 +0.4
190,051 - PGA1_262p01730 0.22 +0.8
190,107 - PGA1_262p01730 0.28 +0.7
190,243 - PGA1_262p01730 0.42 +1.4
190,311 - PGA1_262p01730 0.49 +0.5
190,340 - PGA1_262p01730 0.52 +0.1
190,389 - PGA1_262p01730 0.57 -0.4
190,471 + PGA1_262p01730 0.65 +0.7
190,471 + PGA1_262p01730 0.65 +0.2
190,506 + PGA1_262p01730 0.69 +2.5
190,574 + PGA1_262p01730 0.76 -1.5
190,611 - PGA1_262p01730 0.80 +1.5
190,613 + PGA1_262p01730 0.80 +0.1
190,620 - PGA1_262p01730 0.81 -0.4
190,729 + +0.1
190,737 - -1.2
190,781 + -1.1
190,809 + -0.9

Or see this region's nucleotide sequence