Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2783 and HP15_2784 are separated by 108 nucleotides HP15_2784 and HP15_2785 are separated by 25 nucleotides HP15_2785 and HP15_2786 are separated by 53 nucleotides HP15_2786 and HP15_2787 are separated by 84 nucleotides
HP15_2783: HP15_2783 - polyhydroxyalkanoate depolymerase, intracellular, at 2,932,146 to 2,933,363
_2783
HP15_2784: HP15_2784 - 3-ketoacyl-(acyl-carrier-protein) reductase, at 2,933,472 to 2,934,215
_2784
HP15_2785: HP15_2785 - polyhydroxyalkanoic acid synthase, at 2,934,241 to 2,936,139
_2785
HP15_2786: HP15_2786 - conserved hypothetical protein, secreted, at 2,936,193 to 2,936,882
_2786
HP15_2787: HP15_2787 - ABC-type amino acid transport/signal transduction system, at 2,936,967 to 2,937,611
_2787
Position (kb)
2934
2935
2936
2937 Strain fitness (log2 ratio)
-1
0
1
2 at 2933.249 kb on + strand at 2933.560 kb on + strand, within HP15_2784 at 2933.659 kb on - strand, within HP15_2784 at 2933.712 kb on + strand, within HP15_2784 at 2933.754 kb on + strand, within HP15_2784 at 2933.814 kb on + strand, within HP15_2784 at 2933.814 kb on + strand, within HP15_2784 at 2933.822 kb on - strand, within HP15_2784 at 2933.822 kb on - strand, within HP15_2784 at 2933.822 kb on - strand, within HP15_2784 at 2933.975 kb on + strand, within HP15_2784 at 2934.032 kb on - strand, within HP15_2784 at 2934.053 kb on + strand, within HP15_2784 at 2934.414 kb on - strand at 2934.416 kb on + strand at 2934.498 kb on + strand, within HP15_2785 at 2934.506 kb on - strand, within HP15_2785 at 2934.516 kb on + strand, within HP15_2785 at 2934.538 kb on + strand, within HP15_2785 at 2934.670 kb on - strand, within HP15_2785 at 2934.760 kb on - strand, within HP15_2785 at 2934.775 kb on - strand, within HP15_2785 at 2934.788 kb on - strand, within HP15_2785 at 2934.861 kb on - strand, within HP15_2785 at 2934.893 kb on + strand, within HP15_2785 at 2934.893 kb on + strand, within HP15_2785 at 2934.893 kb on + strand, within HP15_2785 at 2934.893 kb on + strand, within HP15_2785 at 2934.901 kb on - strand, within HP15_2785 at 2935.035 kb on + strand, within HP15_2785 at 2935.095 kb on - strand, within HP15_2785 at 2935.095 kb on - strand, within HP15_2785 at 2935.095 kb on - strand, within HP15_2785 at 2935.100 kb on - strand, within HP15_2785 at 2935.196 kb on + strand, within HP15_2785 at 2935.234 kb on + strand, within HP15_2785 at 2935.250 kb on + strand, within HP15_2785 at 2935.529 kb on + strand, within HP15_2785 at 2935.545 kb on - strand, within HP15_2785 at 2935.584 kb on - strand, within HP15_2785 at 2935.586 kb on + strand, within HP15_2785 at 2935.586 kb on + strand, within HP15_2785 at 2935.621 kb on - strand, within HP15_2785 at 2935.674 kb on + strand, within HP15_2785 at 2935.787 kb on + strand, within HP15_2785 at 2935.846 kb on - strand, within HP15_2785 at 2935.846 kb on - strand, within HP15_2785 at 2935.899 kb on + strand, within HP15_2785 at 2935.907 kb on - strand, within HP15_2785 at 2935.929 kb on + strand, within HP15_2785 at 2935.929 kb on + strand, within HP15_2785 at 2935.937 kb on - strand, within HP15_2785 at 2935.952 kb on - strand at 2935.971 kb on + strand at 2936.015 kb on + strand at 2936.199 kb on - strand at 2936.258 kb on + strand at 2936.266 kb on - strand, within HP15_2786 at 2936.276 kb on - strand, within HP15_2786 at 2936.278 kb on + strand, within HP15_2786 at 2936.288 kb on + strand, within HP15_2786 at 2936.339 kb on + strand, within HP15_2786 at 2936.384 kb on - strand, within HP15_2786 at 2936.420 kb on + strand, within HP15_2786 at 2936.464 kb on + strand, within HP15_2786 at 2936.472 kb on - strand, within HP15_2786 at 2936.479 kb on + strand, within HP15_2786 at 2936.618 kb on + strand, within HP15_2786 at 2936.625 kb on + strand, within HP15_2786 at 2936.626 kb on - strand, within HP15_2786 at 2936.626 kb on - strand, within HP15_2786 at 2936.633 kb on - strand, within HP15_2786 at 2936.684 kb on + strand, within HP15_2786 at 2936.698 kb on + strand, within HP15_2786 at 2936.783 kb on - strand, within HP15_2786 at 2936.784 kb on + strand, within HP15_2786 at 2936.792 kb on - strand, within HP15_2786 at 2936.892 kb on - strand at 2936.958 kb on + strand at 2937.133 kb on - strand, within HP15_2787
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 2,933,249 + +0.2 2,933,560 + HP15_2784 0.12 -0.2 2,933,659 - HP15_2784 0.25 -0.2 2,933,712 + HP15_2784 0.32 +1.3 2,933,754 + HP15_2784 0.38 +1.4 2,933,814 + HP15_2784 0.46 +0.8 2,933,814 + HP15_2784 0.46 -0.0 2,933,822 - HP15_2784 0.47 -0.5 2,933,822 - HP15_2784 0.47 -0.8 2,933,822 - HP15_2784 0.47 -0.7 2,933,975 + HP15_2784 0.68 -0.5 2,934,032 - HP15_2784 0.75 +0.4 2,934,053 + HP15_2784 0.78 -0.1 2,934,414 - +0.5 2,934,416 + -0.7 2,934,498 + HP15_2785 0.14 +0.9 2,934,506 - HP15_2785 0.14 -0.5 2,934,516 + HP15_2785 0.14 -0.5 2,934,538 + HP15_2785 0.16 -0.1 2,934,670 - HP15_2785 0.23 -0.7 2,934,760 - HP15_2785 0.27 -1.6 2,934,775 - HP15_2785 0.28 -0.2 2,934,788 - HP15_2785 0.29 +0.0 2,934,861 - HP15_2785 0.33 -1.0 2,934,893 + HP15_2785 0.34 -0.0 2,934,893 + HP15_2785 0.34 -0.4 2,934,893 + HP15_2785 0.34 -0.6 2,934,893 + HP15_2785 0.34 -0.5 2,934,901 - HP15_2785 0.35 -0.4 2,935,035 + HP15_2785 0.42 +0.2 2,935,095 - HP15_2785 0.45 +1.5 2,935,095 - HP15_2785 0.45 -0.5 2,935,095 - HP15_2785 0.45 +0.1 2,935,100 - HP15_2785 0.45 -0.5 2,935,196 + HP15_2785 0.50 +1.5 2,935,234 + HP15_2785 0.52 +1.0 2,935,250 + HP15_2785 0.53 -0.6 2,935,529 + HP15_2785 0.68 +0.9 2,935,545 - HP15_2785 0.69 +1.1 2,935,584 - HP15_2785 0.71 +0.0 2,935,586 + HP15_2785 0.71 -0.2 2,935,586 + HP15_2785 0.71 -0.3 2,935,621 - HP15_2785 0.73 -0.9 2,935,674 + HP15_2785 0.75 +1.1 2,935,787 + HP15_2785 0.81 +1.1 2,935,846 - HP15_2785 0.85 +1.2 2,935,846 - HP15_2785 0.85 +0.0 2,935,899 + HP15_2785 0.87 -0.6 2,935,907 - HP15_2785 0.88 -0.6 2,935,929 + HP15_2785 0.89 +1.0 2,935,929 + HP15_2785 0.89 -0.3 2,935,937 - HP15_2785 0.89 -1.5 2,935,952 - +0.6 2,935,971 + +0.2 2,936,015 + +1.0 2,936,199 - -0.2 2,936,258 + +1.7 2,936,266 - HP15_2786 0.11 -0.3 2,936,276 - HP15_2786 0.12 +0.4 2,936,278 + HP15_2786 0.12 +1.2 2,936,288 + HP15_2786 0.14 +1.0 2,936,339 + HP15_2786 0.21 -0.7 2,936,384 - HP15_2786 0.28 -0.1 2,936,420 + HP15_2786 0.33 +1.7 2,936,464 + HP15_2786 0.39 -1.0 2,936,472 - HP15_2786 0.40 +1.2 2,936,479 + HP15_2786 0.41 -0.4 2,936,618 + HP15_2786 0.62 +0.7 2,936,625 + HP15_2786 0.63 +0.7 2,936,626 - HP15_2786 0.63 +1.2 2,936,626 - HP15_2786 0.63 +1.2 2,936,633 - HP15_2786 0.64 +1.8 2,936,684 + HP15_2786 0.71 +1.8 2,936,698 + HP15_2786 0.73 +0.0 2,936,783 - HP15_2786 0.86 +1.5 2,936,784 + HP15_2786 0.86 +1.2 2,936,792 - HP15_2786 0.87 +1.8 2,936,892 - +1.0 2,936,958 + -0.0 2,937,133 - HP15_2787 0.26 +0.2
Or see this region's nucleotide sequence