Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1512 and HP15_1513 are separated by 84 nucleotides HP15_1513 and HP15_1514 are separated by 272 nucleotides
HP15_1512: HP15_1512 - Enoyl-CoA hydratase (EC 4.2.1.17) (from data) , at 1,588,416 to 1,590,563
_1512
HP15_1513: HP15_1513 - Acetyl-CoA C-acyltransferase (EC 2.3.1.16) (from data) , at 1,590,648 to 1,591,772
_1513
HP15_1514: HP15_1514 - DNA topoisomerase I, at 1,592,045 to 1,594,687
_1514
Position (kb)
1590
1591
1592 Strain fitness (log2 ratio)
-1
0
1 at 1589.753 kb on + strand, within HP15_1512 at 1589.778 kb on - strand, within HP15_1512 at 1589.858 kb on + strand, within HP15_1512 at 1590.042 kb on - strand, within HP15_1512 at 1590.429 kb on - strand at 1590.481 kb on + strand at 1590.491 kb on + strand at 1590.600 kb on - strand at 1590.601 kb on + strand at 1590.645 kb on + strand at 1590.653 kb on - strand at 1590.728 kb on - strand at 1590.741 kb on - strand at 1590.768 kb on + strand, within HP15_1513 at 1590.786 kb on - strand, within HP15_1513 at 1590.795 kb on + strand, within HP15_1513 at 1590.973 kb on - strand, within HP15_1513 at 1591.103 kb on + strand, within HP15_1513 at 1591.204 kb on + strand, within HP15_1513 at 1591.255 kb on - strand, within HP15_1513 at 1591.358 kb on + strand, within HP15_1513 at 1591.487 kb on - strand, within HP15_1513 at 1591.487 kb on - strand, within HP15_1513 at 1591.550 kb on + strand, within HP15_1513 at 1591.626 kb on + strand, within HP15_1513 at 1591.629 kb on - strand, within HP15_1513 at 1591.656 kb on - strand, within HP15_1513 at 1591.674 kb on - strand at 1591.739 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 1,589,753 + HP15_1512 0.62 -0.3 1,589,778 - HP15_1512 0.63 -0.5 1,589,858 + HP15_1512 0.67 +1.3 1,590,042 - HP15_1512 0.76 -0.9 1,590,429 - +1.0 1,590,481 + +1.3 1,590,491 + -0.7 1,590,600 - -0.5 1,590,601 + +1.0 1,590,645 + +0.1 1,590,653 - +0.9 1,590,728 - +1.3 1,590,741 - +0.1 1,590,768 + HP15_1513 0.11 -0.2 1,590,786 - HP15_1513 0.12 +0.8 1,590,795 + HP15_1513 0.13 -0.6 1,590,973 - HP15_1513 0.29 +0.6 1,591,103 + HP15_1513 0.40 -0.1 1,591,204 + HP15_1513 0.49 +0.2 1,591,255 - HP15_1513 0.54 -0.5 1,591,358 + HP15_1513 0.63 -0.1 1,591,487 - HP15_1513 0.75 +0.6 1,591,487 - HP15_1513 0.75 -0.4 1,591,550 + HP15_1513 0.80 -0.4 1,591,626 + HP15_1513 0.87 -0.3 1,591,629 - HP15_1513 0.87 -0.2 1,591,656 - HP15_1513 0.90 -0.6 1,591,674 - -0.1 1,591,739 - -0.8
Or see this region's nucleotide sequence