Strain Fitness in Marinobacter adhaerens HP15 around HP15_1447

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1445 and HP15_1446 are separated by 36 nucleotidesHP15_1446 and HP15_1447 are separated by 27 nucleotidesHP15_1447 and HP15_1448 are separated by 413 nucleotides HP15_1445: HP15_1445 - hypothetical protein, at 1,520,826 to 1,520,963 _1445 HP15_1446: HP15_1446 - ribonucleotide reductase, alpha subunit, at 1,521,000 to 1,521,698 _1446 HP15_1447: HP15_1447 - ribonucleotide-diphosphate reductase subunit alpha, at 1,521,726 to 1,523,870 _1447 HP15_1448: HP15_1448 - conserved hypothetical protein, secreted, at 1,524,284 to 1,525,135 _1448 Position (kb) 1521 1522 1523 1524Strain fitness (log2 ratio) -3 -2 -1 0 1at 1520.799 kb on - strandat 1520.847 kb on - strand, within HP15_1445at 1521.017 kb on - strandat 1521.027 kb on - strandat 1521.075 kb on - strand, within HP15_1446at 1521.075 kb on - strand, within HP15_1446at 1521.432 kb on + strand, within HP15_1446at 1521.800 kb on - strandat 1521.815 kb on + strandat 1521.815 kb on + strandat 1521.936 kb on - strandat 1522.053 kb on + strand, within HP15_1447at 1522.076 kb on + strand, within HP15_1447at 1522.152 kb on - strand, within HP15_1447at 1522.178 kb on + strand, within HP15_1447at 1522.186 kb on - strand, within HP15_1447at 1522.270 kb on - strand, within HP15_1447at 1522.435 kb on - strand, within HP15_1447at 1522.454 kb on + strand, within HP15_1447at 1522.616 kb on - strand, within HP15_1447at 1522.633 kb on - strand, within HP15_1447at 1522.681 kb on + strand, within HP15_1447at 1522.681 kb on + strand, within HP15_1447at 1522.687 kb on - strand, within HP15_1447at 1522.861 kb on + strand, within HP15_1447at 1522.911 kb on - strand, within HP15_1447at 1522.973 kb on + strand, within HP15_1447at 1523.007 kb on + strand, within HP15_1447at 1523.073 kb on - strand, within HP15_1447at 1523.249 kb on + strand, within HP15_1447at 1523.361 kb on + strand, within HP15_1447at 1523.376 kb on + strand, within HP15_1447at 1523.498 kb on + strand, within HP15_1447at 1523.506 kb on - strand, within HP15_1447at 1523.554 kb on - strand, within HP15_1447at 1523.644 kb on - strand, within HP15_1447at 1523.654 kb on - strand, within HP15_1447at 1523.806 kb on - strandat 1524.233 kb on - strandat 1524.407 kb on - strand, within HP15_1448at 1524.445 kb on + strand, within HP15_1448at 1524.493 kb on - strand, within HP15_1448at 1524.558 kb on + strand, within HP15_1448at 1524.566 kb on - strand, within HP15_1448at 1524.589 kb on - strand, within HP15_1448at 1524.647 kb on - strand, within HP15_1448at 1524.655 kb on + strand, within HP15_1448at 1524.713 kb on - strand, within HP15_1448

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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1,520,799 - -0.3
1,520,847 - HP15_1445 0.15 +0.5
1,521,017 - -2.7
1,521,027 - -1.8
1,521,075 - HP15_1446 0.11 -2.8
1,521,075 - HP15_1446 0.11 -1.9
1,521,432 + HP15_1446 0.62 -2.5
1,521,800 - -2.6
1,521,815 + -2.0
1,521,815 + -2.5
1,521,936 - -2.6
1,522,053 + HP15_1447 0.15 -2.4
1,522,076 + HP15_1447 0.16 -1.4
1,522,152 - HP15_1447 0.20 -0.8
1,522,178 + HP15_1447 0.21 -2.5
1,522,186 - HP15_1447 0.21 -2.6
1,522,270 - HP15_1447 0.25 -1.9
1,522,435 - HP15_1447 0.33 -1.8
1,522,454 + HP15_1447 0.34 -2.7
1,522,616 - HP15_1447 0.41 -2.8
1,522,633 - HP15_1447 0.42 -2.9
1,522,681 + HP15_1447 0.45 -1.9
1,522,681 + HP15_1447 0.45 -2.9
1,522,687 - HP15_1447 0.45 -2.5
1,522,861 + HP15_1447 0.53 -2.3
1,522,911 - HP15_1447 0.55 -3.4
1,522,973 + HP15_1447 0.58 -2.7
1,523,007 + HP15_1447 0.60 -1.2
1,523,073 - HP15_1447 0.63 -1.8
1,523,249 + HP15_1447 0.71 -3.4
1,523,361 + HP15_1447 0.76 -2.7
1,523,376 + HP15_1447 0.77 -2.2
1,523,498 + HP15_1447 0.83 -2.1
1,523,506 - HP15_1447 0.83 -1.9
1,523,554 - HP15_1447 0.85 -3.0
1,523,644 - HP15_1447 0.89 -2.4
1,523,654 - HP15_1447 0.90 -2.0
1,523,806 - -1.4
1,524,233 - +1.2
1,524,407 - HP15_1448 0.14 +0.6
1,524,445 + HP15_1448 0.19 -0.5
1,524,493 - HP15_1448 0.25 +0.9
1,524,558 + HP15_1448 0.32 +1.4
1,524,566 - HP15_1448 0.33 -0.3
1,524,589 - HP15_1448 0.36 +1.0
1,524,647 - HP15_1448 0.43 -0.1
1,524,655 + HP15_1448 0.44 -0.3
1,524,713 - HP15_1448 0.50 +1.7

Or see this region's nucleotide sequence