Strain Fitness in Marinobacter adhaerens HP15 around HP15_1032

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1030 and HP15_1031 are separated by 1 nucleotidesHP15_1031 and HP15_1032 overlap by 4 nucleotidesHP15_1032 and HP15_1033 are separated by 92 nucleotides HP15_1030: HP15_1030 - sulfate permease family protein, at 1,048,090 to 1,049,577 _1030 HP15_1031: HP15_1031 - UspA domain protein, at 1,049,579 to 1,050,505 _1031 HP15_1032: HP15_1032 - phospholipase, patatin family, at 1,050,502 to 1,051,368 _1032 HP15_1033: HP15_1033 - flavoprotein, NADB Rossmann superfamily, at 1,051,461 to 1,052,642 _1033 Position (kb) 1050 1051 1052Strain fitness (log2 ratio) -1 0 1at 1050.010 kb on - strand, within HP15_1031at 1050.027 kb on - strand, within HP15_1031at 1050.034 kb on - strand, within HP15_1031at 1050.179 kb on + strand, within HP15_1031at 1050.187 kb on - strand, within HP15_1031at 1050.247 kb on + strand, within HP15_1031at 1050.255 kb on - strand, within HP15_1031at 1050.270 kb on + strand, within HP15_1031at 1050.288 kb on - strand, within HP15_1031at 1050.457 kb on - strandat 1050.530 kb on + strandat 1050.530 kb on + strandat 1050.530 kb on + strandat 1050.543 kb on - strandat 1050.683 kb on - strand, within HP15_1032at 1050.790 kb on - strand, within HP15_1032at 1050.824 kb on + strand, within HP15_1032at 1050.883 kb on - strand, within HP15_1032at 1050.921 kb on - strand, within HP15_1032at 1050.934 kb on - strand, within HP15_1032at 1050.966 kb on - strand, within HP15_1032at 1050.987 kb on + strand, within HP15_1032at 1051.000 kb on - strand, within HP15_1032at 1051.039 kb on + strand, within HP15_1032at 1051.120 kb on - strand, within HP15_1032at 1051.253 kb on + strand, within HP15_1032at 1051.261 kb on - strand, within HP15_1032at 1051.276 kb on + strand, within HP15_1032at 1051.285 kb on - strandat 1051.392 kb on - strandat 1051.401 kb on + strandat 1051.409 kb on - strandat 1051.420 kb on - strandat 1051.582 kb on + strand, within HP15_1033at 1051.633 kb on - strand, within HP15_1033at 1051.680 kb on + strand, within HP15_1033at 1051.785 kb on + strand, within HP15_1033at 1051.790 kb on + strand, within HP15_1033at 1051.793 kb on - strand, within HP15_1033at 1051.798 kb on - strand, within HP15_1033at 1051.798 kb on - strand, within HP15_1033at 1051.887 kb on + strand, within HP15_1033at 1051.933 kb on + strand, within HP15_1033at 1052.071 kb on - strand, within HP15_1033at 1052.077 kb on - strand, within HP15_1033at 1052.187 kb on + strand, within HP15_1033

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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1,050,010 - HP15_1031 0.46 +1.1
1,050,027 - HP15_1031 0.48 -0.8
1,050,034 - HP15_1031 0.49 +1.5
1,050,179 + HP15_1031 0.65 -0.3
1,050,187 - HP15_1031 0.66 +1.0
1,050,247 + HP15_1031 0.72 +1.4
1,050,255 - HP15_1031 0.73 -0.2
1,050,270 + HP15_1031 0.75 -0.7
1,050,288 - HP15_1031 0.76 -0.5
1,050,457 - -1.3
1,050,530 + +1.3
1,050,530 + +1.4
1,050,530 + -0.6
1,050,543 - -0.3
1,050,683 - HP15_1032 0.21 -0.0
1,050,790 - HP15_1032 0.33 -0.7
1,050,824 + HP15_1032 0.37 +0.2
1,050,883 - HP15_1032 0.44 +0.4
1,050,921 - HP15_1032 0.48 -1.0
1,050,934 - HP15_1032 0.50 -0.4
1,050,966 - HP15_1032 0.54 -0.0
1,050,987 + HP15_1032 0.56 -0.7
1,051,000 - HP15_1032 0.57 -0.0
1,051,039 + HP15_1032 0.62 -0.8
1,051,120 - HP15_1032 0.71 +1.2
1,051,253 + HP15_1032 0.87 -0.8
1,051,261 - HP15_1032 0.88 -0.0
1,051,276 + HP15_1032 0.89 -1.1
1,051,285 - -0.3
1,051,392 - +1.2
1,051,401 + +0.4
1,051,409 - -0.5
1,051,420 - +0.8
1,051,582 + HP15_1033 0.10 -0.7
1,051,633 - HP15_1033 0.15 -0.2
1,051,680 + HP15_1033 0.19 -0.6
1,051,785 + HP15_1033 0.27 +0.9
1,051,790 + HP15_1033 0.28 -0.6
1,051,793 - HP15_1033 0.28 -0.3
1,051,798 - HP15_1033 0.29 +0.0
1,051,798 - HP15_1033 0.29 -0.4
1,051,887 + HP15_1033 0.36 -0.6
1,051,933 + HP15_1033 0.40 -0.3
1,052,071 - HP15_1033 0.52 -0.3
1,052,077 - HP15_1033 0.52 +0.2
1,052,187 + HP15_1033 0.61 +1.1

Or see this region's nucleotide sequence