Strain Fitness in Shewanella amazonensis SB2B around Sama_3442

Experiment: copper (II) chloride 0.16 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	copper (II) chloride 0.16 mM
4,072,106	+				-1.0
4,072,106	+				-0.1
4,072,142	-		Sama_3440	0.14	+0.2
4,072,238	+		Sama_3440	0.34	-0.1
4,072,267	+		Sama_3440	0.40	+0.1
4,072,346	-		Sama_3440	0.57	-0.4
4,072,358	+		Sama_3440	0.59	-0.4
4,072,358	+		Sama_3440	0.59	+0.5
4,072,359	-		Sama_3440	0.59	-0.2
4,072,374	+		Sama_3440	0.62	-0.4
4,072,374	+		Sama_3440	0.62	+0.7
4,072,374	+		Sama_3440	0.62	-0.4
4,072,375	-		Sama_3440	0.63	-1.1
4,072,375	-		Sama_3440	0.63	-1.0
4,072,450	+		Sama_3440	0.78	-1.2
4,072,450	+		Sama_3440	0.78	+0.5
4,072,450	+		Sama_3440	0.78	-0.6
4,072,451	-		Sama_3440	0.79	-0.4
4,072,451	-		Sama_3440	0.79	+1.2
4,072,485	+		Sama_3440	0.86	-0.5
4,072,485	+		Sama_3440	0.86	+0.4
4,072,486	-		Sama_3440	0.86	-1.6
4,072,486	-		Sama_3440	0.86	+0.5
4,072,486	-		Sama_3440	0.86	-0.1
4,072,504	+		Sama_3440	0.90	+0.2
4,072,505	-				+0.4
4,072,511	+				+0.0
4,072,511	+				-0.8
4,072,512	-				-0.3
4,072,512	-				+2.7
4,072,550	+				-0.6
4,072,560	+				-0.1
4,072,560	+				-0.8
4,072,560	+				-0.2
4,072,561	-				+0.1
4,072,561	-				-1.2
4,072,564	+				+0.9
4,072,564	+				-0.5
4,072,564	+				-0.7
4,072,565	-				+0.9
4,072,565	-				-0.2
4,072,614	-		Sama_3441	0.11	-1.8
4,072,624	-		Sama_3441	0.13	-0.2
4,072,624	-		Sama_3441	0.13	-0.6
4,072,632	+		Sama_3441	0.14	-0.1
4,072,633	-		Sama_3441	0.15	-0.1
4,072,633	-		Sama_3441	0.15	+0.6
4,072,633	-		Sama_3441	0.15	+0.6
4,072,642	+		Sama_3441	0.16	-0.3
4,072,642	+		Sama_3441	0.16	+0.3
4,072,642	+		Sama_3441	0.16	+0.6
4,072,643	-		Sama_3441	0.17	-1.4
4,072,643	-		Sama_3441	0.17	-0.3
4,072,643	-		Sama_3441	0.17	+0.3
4,072,712	+		Sama_3441	0.30	+0.1
4,072,712	+		Sama_3441	0.30	-0.2
4,072,712	+		Sama_3441	0.30	+0.4
4,072,713	-		Sama_3441	0.31	+0.5
4,072,713	-		Sama_3441	0.31	-0.7
4,072,713	-		Sama_3441	0.31	-0.9
4,072,713	-		Sama_3441	0.31	-0.6
4,072,713	-		Sama_3441	0.31	-0.8
4,072,713	-		Sama_3441	0.31	+0.8
4,072,759	-		Sama_3441	0.40	+0.3
4,072,777	-		Sama_3441	0.43	-0.3
4,072,816	+		Sama_3441	0.51	-1.6
4,072,816	+		Sama_3441	0.51	-0.9
4,072,816	+		Sama_3441	0.51	+0.3
4,072,816	+		Sama_3441	0.51	+1.0
4,072,821	+		Sama_3441	0.52	-1.2
4,072,821	+		Sama_3441	0.52	+0.3
4,072,821	+		Sama_3441	0.52	-1.6
4,072,821	+		Sama_3441	0.52	-0.8
4,072,822	-		Sama_3441	0.52	-0.4
4,072,822	-		Sama_3441	0.52	+0.6
4,072,906	+		Sama_3441	0.69	-0.6
4,072,907	-		Sama_3441	0.69	-0.3
4,073,008	+		Sama_3441	0.89	+0.2
4,073,009	-		Sama_3441	0.89	+0.3
4,073,080	+				-1.2
4,073,080	+				-0.8
4,073,081	-				+0.2
4,073,154	-		Sama_3442	0.13	+0.0
4,073,200	+		Sama_3442	0.21	-0.4
4,073,200	+		Sama_3442	0.21	+0.5
4,073,200	+		Sama_3442	0.21	+0.9
4,073,200	+		Sama_3442	0.21	+0.0
4,073,200	+		Sama_3442	0.21	-0.1
4,073,201	-		Sama_3442	0.21	+0.1
4,073,201	-		Sama_3442	0.21	+0.8
4,073,201	-		Sama_3442	0.21	-0.0
4,073,201	-		Sama_3442	0.21	-1.0
4,073,301	+		Sama_3442	0.39	-0.1
4,073,301	+		Sama_3442	0.39	+0.5
4,073,301	+		Sama_3442	0.39	+1.2
4,073,301	+		Sama_3442	0.39	+0.5
4,073,301	+		Sama_3442	0.39	-0.1
4,073,301	+		Sama_3442	0.39	+0.3
4,073,301	+		Sama_3442	0.39	-1.2
4,073,301	+		Sama_3442	0.39	-2.0
4,073,301	+		Sama_3442	0.39	+1.4
4,073,301	+		Sama_3442	0.39	-0.8
4,073,301	+		Sama_3442	0.39	+0.4
4,073,301	+		Sama_3442	0.39	-0.7
4,073,302	-		Sama_3442	0.39	+0.2
4,073,302	-		Sama_3442	0.39	+1.4
4,073,302	-		Sama_3442	0.39	+0.3
4,073,302	-		Sama_3442	0.39	-0.4
4,073,302	-		Sama_3442	0.39	-0.5
4,073,302	-		Sama_3442	0.39	+0.2
4,073,302	-		Sama_3442	0.39	+0.6
4,073,302	-		Sama_3442	0.39	+0.2
4,073,302	-		Sama_3442	0.39	+0.1
4,073,302	-		Sama_3442	0.39	-0.8
4,073,302	-		Sama_3442	0.39	-1.2
4,073,333	-		Sama_3442	0.44	+0.7
4,073,333	-		Sama_3442	0.44	-0.1
4,073,393	+		Sama_3442	0.55	+0.5
4,073,393	+		Sama_3442	0.55	-0.4
4,073,393	+		Sama_3442	0.55	+0.0
4,073,394	-		Sama_3442	0.55	+0.6
4,073,394	-		Sama_3442	0.55	+1.2
4,073,429	-		Sama_3442	0.61	-0.2
4,073,429	-		Sama_3442	0.61	-0.3
4,073,436	+		Sama_3442	0.62	-1.3
4,073,436	+		Sama_3442	0.62	+1.8
4,073,494	+		Sama_3442	0.72	+2.0
4,073,494	+		Sama_3442	0.72	+1.3
4,073,494	+		Sama_3442	0.72	-0.3
4,073,494	+		Sama_3442	0.72	+2.0
4,073,494	+		Sama_3442	0.72	-0.8
4,073,494	+		Sama_3442	0.72	+0.5
4,073,494	+		Sama_3442	0.72	-0.4
4,073,494	+		Sama_3442	0.72	+0.6
4,073,494	+		Sama_3442	0.72	-0.0
4,073,495	-		Sama_3442	0.72	+0.4
4,073,495	-		Sama_3442	0.72	-0.2
4,073,495	-		Sama_3442	0.72	+0.0
4,073,495	-		Sama_3442	0.72	-0.1
4,073,520	+		Sama_3442	0.77	+0.8
4,073,520	+		Sama_3442	0.77	+0.2
4,073,520	+		Sama_3442	0.77	+0.3
4,073,521	-		Sama_3442	0.77	-1.0
4,073,521	-		Sama_3442	0.77	+0.3
4,073,541	+		Sama_3442	0.80	-0.8
4,073,727	+				-0.1
4,073,727	+				-1.6
4,073,727	+				-1.1
4,073,727	+				+0.8
4,073,727	+				-0.4
4,073,727	+				+0.0
4,073,727	+				-2.0
4,073,727	+				+0.0
4,073,728	-				-0.6
4,073,728	-				+0.2
4,073,728	-				-1.2
4,073,728	-				-0.5
4,073,728	-				+0.5
4,073,728	-				-0.2
4,073,733	+				+0.0
4,073,733	+				-1.4
4,073,733	+				+0.5
4,073,734	-				+0.5
4,073,734	-				-0.5
4,073,734	-				+1.2
4,073,734	-				-1.0
4,073,743	-				-0.9
4,073,835	+				+0.5
4,073,835	+				-1.0
4,073,836	-				-0.4
4,073,870	-				-0.2
4,073,882	+				-1.3
4,073,883	-				-1.0
4,073,941	+				-0.3
4,073,941	+				-1.4
4,073,941	+				-0.4
4,073,941	+				+0.3
4,073,941	+				+0.6
4,073,941	+				-0.0
4,073,941	+				-0.3
4,073,941	+				-1.0
4,073,941	+				-1.2
4,073,942	-				+0.0
4,073,942	-				-0.3
4,073,942	-				+1.2
4,073,942	-				-0.6
4,073,942	-				-1.4
4,073,942	-				-0.2
4,073,942	-				-2.4
4,073,942	-				+0.2
4,073,945	+				-0.6
4,073,945	+				-0.6
4,073,945	+				+0.5
4,073,946	-				-0.5
4,073,946	-				+0.2
4,073,990	+		Sama_3443	0.12	+0.1
4,074,008	+		Sama_3443	0.13	-0.3
4,074,008	+		Sama_3443	0.13	+1.7
4,074,008	+		Sama_3443	0.13	-0.3
4,074,008	+		Sama_3443	0.13	-0.3
4,074,008	+		Sama_3443	0.13	-0.6
4,074,009	-		Sama_3443	0.13	-1.4
4,074,009	-		Sama_3443	0.13	+1.2
4,074,009	-		Sama_3443	0.13	-1.0
4,074,009	-		Sama_3443	0.13	-1.3
4,074,009	-		Sama_3443	0.13	+0.2
4,074,009	-		Sama_3443	0.13	-0.4
4,074,009	-		Sama_3443	0.13	-1.4
4,074,010	+		Sama_3443	0.13	-0.6
4,074,010	+		Sama_3443	0.13	-2.3
4,074,010	+		Sama_3443	0.13	+1.2
4,074,010	+		Sama_3443	0.13	-0.4
4,074,010	+		Sama_3443	0.13	-1.1
4,074,010	+		Sama_3443	0.13	-0.7
4,074,010	+		Sama_3443	0.13	-0.0
4,074,011	-		Sama_3443	0.13	+0.9
4,074,011	-		Sama_3443	0.13	+0.3
4,074,011	-		Sama_3443	0.13	-0.0
4,074,011	-		Sama_3443	0.13	+0.1
4,074,011	-		Sama_3443	0.13	-0.7
4,074,011	-		Sama_3443	0.13	+0.3
4,074,011	-		Sama_3443	0.13	-0.3
4,074,017	+		Sama_3443	0.14	-0.4
4,074,017	+		Sama_3443	0.14	-1.3
4,074,018	-		Sama_3443	0.14	+1.2
4,074,028	+		Sama_3443	0.15	-1.3
4,074,029	-		Sama_3443	0.15	-0.5
4,074,029	-		Sama_3443	0.15	-1.8
4,074,034	+		Sama_3443	0.15	+2.7
4,074,034	+		Sama_3443	0.15	-0.6
4,074,034	+		Sama_3443	0.15	+0.7
4,074,034	+		Sama_3443	0.15	+0.0
4,074,034	+		Sama_3443	0.15	-0.0
4,074,034	+		Sama_3443	0.15	+0.7
4,074,034	+		Sama_3443	0.15	+0.6
4,074,034	+		Sama_3443	0.15	-1.8
4,074,034	+		Sama_3443	0.15	+2.2
4,074,035	-		Sama_3443	0.15	-0.3
4,074,035	-		Sama_3443	0.15	-0.8
4,074,035	-		Sama_3443	0.15	-0.3
4,074,035	-		Sama_3443	0.15	+0.9
4,074,035	-		Sama_3443	0.15	-0.3
4,074,035	-		Sama_3443	0.15	-2.4
4,074,035	-		Sama_3443	0.15	-0.7
4,074,035	-		Sama_3443	0.15	-0.5
4,074,103	+		Sama_3443	0.20	-0.3
4,074,135	+		Sama_3443	0.22	+0.4
4,074,135	+		Sama_3443	0.22	+0.3
4,074,135	+		Sama_3443	0.22	-0.2
4,074,135	+		Sama_3443	0.22	+0.1
4,074,135	+		Sama_3443	0.22	+0.5
4,074,136	-		Sama_3443	0.22	-1.5
4,074,136	-		Sama_3443	0.22	-1.3
4,074,136	-		Sama_3443	0.22	-1.0
4,074,136	-		Sama_3443	0.22	+0.0
4,074,136	-		Sama_3443	0.22	+1.2
4,074,136	-		Sama_3443	0.22	-0.6
4,074,160	+		Sama_3443	0.24	-0.2
4,074,161	-		Sama_3443	0.24	-2.1
4,074,219	+		Sama_3443	0.28	+0.2
4,074,219	+		Sama_3443	0.28	+0.2
4,074,219	+		Sama_3443	0.28	+2.0
4,074,219	+		Sama_3443	0.28	-0.4
4,074,220	-		Sama_3443	0.28	+0.2
4,074,220	-		Sama_3443	0.28	-2.3
4,074,220	-		Sama_3443	0.28	-0.3
4,074,271	+		Sama_3443	0.32	-0.6
4,074,271	+		Sama_3443	0.32	-1.2
4,074,271	+		Sama_3443	0.32	-0.0
4,074,271	+		Sama_3443	0.32	+0.6
4,074,271	+		Sama_3443	0.32	-0.4
4,074,271	+		Sama_3443	0.32	-2.2
4,074,272	-		Sama_3443	0.32	+0.4
4,074,272	-		Sama_3443	0.32	+0.1
4,074,272	-		Sama_3443	0.32	-1.0
4,074,317	+		Sama_3443	0.35	-2.0
4,074,318	-		Sama_3443	0.35	-0.0
4,074,336	-		Sama_3443	0.36	-1.0
4,074,336	-		Sama_3443	0.36	-1.3
4,074,336	-		Sama_3443	0.36	+1.6
4,074,336	-		Sama_3443	0.36	-0.4
4,074,336	-		Sama_3443	0.36	-1.1
4,074,342	+		Sama_3443	0.37	+0.8
4,074,342	+		Sama_3443	0.37	-1.1
4,074,371	+		Sama_3443	0.39	-1.3
4,074,372	-		Sama_3443	0.39	-1.7
4,074,477	+		Sama_3443	0.46	-0.1
4,074,578	+		Sama_3443	0.53	-1.9
4,074,578	+		Sama_3443	0.53	-2.2
4,074,587	+		Sama_3443	0.54	+0.0
4,074,588	-		Sama_3443	0.54	-0.5
4,074,598	+		Sama_3443	0.55	+0.1
4,074,598	+		Sama_3443	0.55	-0.8
4,074,598	+		Sama_3443	0.55	-0.7
4,074,598	+		Sama_3443	0.55	+1.9
4,074,599	-		Sama_3443	0.55	+0.8
4,074,599	-		Sama_3443	0.55	+0.3
4,074,599	-		Sama_3443	0.55	-0.4
4,074,599	-		Sama_3443	0.55	-0.8
4,074,610	+		Sama_3443	0.56	-0.6
4,074,610	+		Sama_3443	0.56	-1.2
4,074,610	+		Sama_3443	0.56	-0.0
4,074,610	+		Sama_3443	0.56	-0.2
4,074,611	-		Sama_3443	0.56	-1.0
4,074,611	-		Sama_3443	0.56	-0.3
4,074,611	-		Sama_3443	0.56	-0.3
4,074,611	-		Sama_3443	0.56	-0.4
4,074,611	-		Sama_3443	0.56	-0.6
4,074,635	+		Sama_3443	0.57	-1.1
4,074,635	+		Sama_3443	0.57	-0.3
4,074,635	+		Sama_3443	0.57	-1.2
4,074,635	+		Sama_3443	0.57	-0.6
4,074,635	+		Sama_3443	0.57	-1.5
4,074,635	+		Sama_3443	0.57	-1.1
4,074,636	-		Sama_3443	0.57	-0.0
4,074,636	-		Sama_3443	0.57	-0.6
4,074,636	-		Sama_3443	0.57	+0.9
4,074,636	-		Sama_3443	0.57	-0.4
4,074,636	-		Sama_3443	0.57	+0.7
4,074,636	-		Sama_3443	0.57	+0.4
4,074,636	-		Sama_3443	0.57	+0.2
4,074,636	-		Sama_3443	0.57	-0.2
4,074,639	-		Sama_3443	0.58	-3.2