Strain Fitness in Shewanella amazonensis SB2B around Sama_3360

Experiment: copper (II) chloride 0.16 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	copper (II) chloride 0.16 mM
3,986,566	-				+0.9
3,986,608	+				+0.2
3,986,608	+				-0.0
3,986,608	+				+1.2
3,986,608	+				-0.1
3,986,897	+		Sama_3359	0.33	+0.9
3,986,897	+		Sama_3359	0.33	+0.8
3,986,897	+		Sama_3359	0.33	-0.0
3,986,898	-		Sama_3359	0.33	+0.2
3,986,898	-		Sama_3359	0.33	-0.6
3,986,898	-		Sama_3359	0.33	+0.1
3,986,898	-		Sama_3359	0.33	+0.4
3,986,898	-		Sama_3359	0.33	-0.9
3,987,022	+		Sama_3359	0.47	-0.5
3,987,022	+		Sama_3359	0.47	-1.1
3,987,023	-		Sama_3359	0.47	-1.2
3,987,028	+		Sama_3359	0.48	+0.6
3,987,028	+		Sama_3359	0.48	+0.9
3,987,028	+		Sama_3359	0.48	+0.6
3,987,089	-		Sama_3359	0.55	-0.6
3,987,192	+		Sama_3359	0.66	-0.7
3,987,192	+		Sama_3359	0.66	+1.1
3,987,192	+		Sama_3359	0.66	-0.5
3,987,192	+		Sama_3359	0.66	+1.1
3,987,192	+		Sama_3359	0.66	-0.0
3,987,192	+		Sama_3359	0.66	+1.7
3,987,193	-		Sama_3359	0.66	+0.7
3,987,193	-		Sama_3359	0.66	+0.9
3,987,193	-		Sama_3359	0.66	-0.3
3,987,193	-		Sama_3359	0.66	-0.2
3,987,193	-		Sama_3359	0.66	+0.5
3,987,193	-		Sama_3359	0.66	+1.6
3,987,193	-		Sama_3359	0.66	+0.1
3,987,193	-		Sama_3359	0.66	+0.0
3,987,260	+		Sama_3359	0.74	-0.0
3,987,260	+		Sama_3359	0.74	-0.6
3,987,260	+		Sama_3359	0.74	+0.6
3,987,260	+		Sama_3359	0.74	-0.3
3,987,260	+		Sama_3359	0.74	-1.9
3,987,260	+		Sama_3359	0.74	-0.0
3,987,260	+		Sama_3359	0.74	-0.3
3,987,261	-		Sama_3359	0.74	+0.4
3,987,261	-		Sama_3359	0.74	-0.9
3,987,261	-		Sama_3359	0.74	-0.2
3,987,261	-		Sama_3359	0.74	+0.7
3,987,270	+		Sama_3359	0.75	+0.4
3,987,270	+		Sama_3359	0.75	-0.2
3,987,270	+		Sama_3359	0.75	-0.5
3,987,270	+		Sama_3359	0.75	+0.2
3,987,270	+		Sama_3359	0.75	-0.7
3,987,270	+		Sama_3359	0.75	-2.0
3,987,270	+		Sama_3359	0.75	-1.0
3,987,270	+		Sama_3359	0.75	-0.2
3,987,270	+		Sama_3359	0.75	+0.8
3,987,270	+		Sama_3359	0.75	-0.2
3,987,270	+		Sama_3359	0.75	-1.7
3,987,270	+		Sama_3359	0.75	+0.1
3,987,271	-		Sama_3359	0.75	-0.5
3,987,271	-		Sama_3359	0.75	-1.0
3,987,271	-		Sama_3359	0.75	-0.4
3,987,271	-		Sama_3359	0.75	+0.6
3,987,271	-		Sama_3359	0.75	+0.1
3,987,271	-		Sama_3359	0.75	+0.1
3,987,271	-		Sama_3359	0.75	+1.5
3,987,271	-		Sama_3359	0.75	-1.2
3,987,282	+		Sama_3359	0.76	+0.6
3,987,283	-		Sama_3359	0.76	+1.1
3,987,309	+		Sama_3359	0.79	+1.1
3,987,309	+		Sama_3359	0.79	-0.1
3,987,309	+		Sama_3359	0.79	+0.5
3,987,309	+		Sama_3359	0.79	+0.1
3,987,310	-		Sama_3359	0.79	-0.4
3,987,310	-		Sama_3359	0.79	+0.3
3,987,500	+				-0.5
3,987,549	+				+0.2
3,987,549	+				+0.1
3,987,550	-				+0.8
3,987,552	-				+0.2
3,987,552	-				-0.4
3,987,552	-				+0.5
3,988,589	-				+1.6
3,988,589	-				+0.6
3,988,589	-				+0.4
3,988,589	-				+0.2
3,988,604	-				+1.1
3,988,604	-				-1.6
3,988,604	-				+1.0
3,988,604	-				-0.2
3,988,604	-				-0.3
3,988,604	-				-1.9
3,988,604	-				-0.0
3,988,604	-				-0.3
3,988,604	-				+1.6
3,988,608	-				+0.4
3,988,608	-				+0.2
3,988,608	-				-0.4
3,988,645	-		Sama_3361	0.13	+0.2
3,988,645	-		Sama_3361	0.13	-0.4
3,988,645	-		Sama_3361	0.13	-0.8
3,988,645	-		Sama_3361	0.13	+0.1
3,988,645	-		Sama_3361	0.13	-0.2
3,988,645	-		Sama_3361	0.13	-0.5
3,988,645	-		Sama_3361	0.13	-0.4
3,988,645	-		Sama_3361	0.13	-0.8
3,988,645	-		Sama_3361	0.13	-0.9
3,988,657	-		Sama_3361	0.14	+0.5
3,988,657	-		Sama_3361	0.14	+0.5
3,988,657	-		Sama_3361	0.14	+0.6
3,988,700	+		Sama_3361	0.21	+0.5
3,988,700	+		Sama_3361	0.21	+0.0
3,988,700	+		Sama_3361	0.21	+0.8
3,988,700	+		Sama_3361	0.21	-1.6
3,988,700	+		Sama_3361	0.21	-1.9
3,988,700	+		Sama_3361	0.21	+0.7
3,988,700	+		Sama_3361	0.21	+0.3
3,988,700	+		Sama_3361	0.21	+1.5
3,988,700	+		Sama_3361	0.21	-0.3
3,988,700	+		Sama_3361	0.21	+0.9
3,988,701	-		Sama_3361	0.21	+0.3
3,988,701	-		Sama_3361	0.21	-0.4
3,988,701	-		Sama_3361	0.21	-0.5
3,988,701	-		Sama_3361	0.21	-0.1
3,988,702	+		Sama_3361	0.21	-0.6
3,988,702	+		Sama_3361	0.21	-0.4
3,988,702	+		Sama_3361	0.21	+0.1
3,988,702	+		Sama_3361	0.21	+0.6
3,988,702	+		Sama_3361	0.21	-0.2
3,988,703	-		Sama_3361	0.21	+1.1
3,988,703	-		Sama_3361	0.21	+1.4
3,988,703	-		Sama_3361	0.21	+0.1
3,988,703	-		Sama_3361	0.21	-1.2
3,988,885	+		Sama_3361	0.48	+0.6
3,988,886	-		Sama_3361	0.48	-0.1
3,988,886	-		Sama_3361	0.48	+0.4
3,988,886	-		Sama_3361	0.48	-0.5
3,988,891	+		Sama_3361	0.49	-0.4
3,988,897	+		Sama_3361	0.49	-1.7
3,988,897	+		Sama_3361	0.49	+0.8
3,988,953	+		Sama_3361	0.58	-1.4
3,988,953	+		Sama_3361	0.58	+0.3
3,988,953	+		Sama_3361	0.58	+0.3
3,988,953	+		Sama_3361	0.58	+0.1
3,988,953	+		Sama_3361	0.58	+0.1
3,988,953	+		Sama_3361	0.58	+1.5
3,988,953	+		Sama_3361	0.58	+1.3
3,988,953	+		Sama_3361	0.58	+0.2
3,988,953	+		Sama_3361	0.58	+0.3
3,988,953	+		Sama_3361	0.58	-2.6
3,988,953	+		Sama_3361	0.58	+0.4
3,988,953	+		Sama_3361	0.58	+0.0
3,988,953	+		Sama_3361	0.58	+0.1
3,988,953	+		Sama_3361	0.58	+1.3
3,988,954	-		Sama_3361	0.58	+2.1
3,988,954	-		Sama_3361	0.58	+1.4
3,988,954	-		Sama_3361	0.58	+0.4
3,988,954	-		Sama_3361	0.58	-0.4
3,988,954	-		Sama_3361	0.58	+0.3
3,988,954	-		Sama_3361	0.58	+0.7
3,988,954	-		Sama_3361	0.58	+1.2
3,988,954	-		Sama_3361	0.58	-0.8
3,988,986	+		Sama_3361	0.62	-0.2
3,988,986	+		Sama_3361	0.62	+0.6
3,988,996	+		Sama_3361	0.64	+1.8
3,988,996	+		Sama_3361	0.64	+1.0
3,988,996	+		Sama_3361	0.64	+0.4
3,988,997	-		Sama_3361	0.64	+0.2
3,988,997	-		Sama_3361	0.64	-0.8
3,989,023	+		Sama_3361	0.68	+0.9
3,989,023	+		Sama_3361	0.68	+0.0
3,989,024	-		Sama_3361	0.68	+0.5
3,989,024	-		Sama_3361	0.68	-1.2
3,989,024	-		Sama_3361	0.68	-0.2
3,989,224	+				+1.1
3,989,225	-				+0.1
3,989,251	+				+0.0
3,989,251	+				+0.1
3,989,252	-				+1.1
3,989,252	-				-0.3
3,989,252	-				+0.9
3,989,252	-				+0.5
3,989,252	-				+0.4
3,989,252	-				+0.6
3,989,252	-				-0.3