Strain Fitness in Shewanella amazonensis SB2B around Sama_3241

Experiment: copper (II) chloride 0.16 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	copper (II) chloride 0.16 mM
3,834,063	+		Sama_3240	0.45	+2.2
3,834,128	+		Sama_3240	0.50	+0.6
3,834,128	+		Sama_3240	0.50	+0.8
3,834,129	-		Sama_3240	0.50	+6.8
3,834,129	-		Sama_3240	0.50	+6.8
3,834,129	-		Sama_3240	0.50	+7.0
3,834,129	-		Sama_3240	0.50	+7.9
3,834,129	-		Sama_3240	0.50	+7.4
3,834,129	-		Sama_3240	0.50	+7.2
3,834,155	+		Sama_3240	0.52	+2.9
3,834,155	+		Sama_3240	0.52	+1.6
3,834,155	+		Sama_3240	0.52	+1.7
3,834,155	+		Sama_3240	0.52	+2.5
3,834,155	+		Sama_3240	0.52	+1.3
3,834,155	+		Sama_3240	0.52	+1.9
3,834,155	+		Sama_3240	0.52	+1.8
3,834,156	-		Sama_3240	0.52	+7.7
3,834,156	-		Sama_3240	0.52	+6.7
3,834,156	-		Sama_3240	0.52	+7.0
3,834,156	-		Sama_3240	0.52	+7.0
3,834,156	-		Sama_3240	0.52	+7.4
3,834,156	-		Sama_3240	0.52	+6.6
3,834,185	+		Sama_3240	0.55	+1.2
3,834,185	+		Sama_3240	0.55	+1.7
3,834,185	+		Sama_3240	0.55	+2.3
3,834,185	+		Sama_3240	0.55	+2.5
3,834,186	-		Sama_3240	0.55	+6.5
3,834,186	-		Sama_3240	0.55	+8.1
3,834,186	-		Sama_3240	0.55	+7.9
3,834,186	-		Sama_3240	0.55	+7.2
3,834,186	-		Sama_3240	0.55	+7.7
3,834,210	+		Sama_3240	0.56	+3.0
3,834,211	-		Sama_3240	0.57	+6.5
3,834,259	+		Sama_3240	0.60	+2.5
3,834,260	-		Sama_3240	0.60	+7.2
3,834,260	-		Sama_3240	0.60	+6.9
3,834,323	+		Sama_3240	0.65	+1.0
3,834,343	-		Sama_3240	0.66	+5.8
3,834,418	+		Sama_3240	0.72	+2.1
3,834,419	-		Sama_3240	0.72	+6.8
3,834,429	-		Sama_3240	0.73	+7.1
3,834,451	-		Sama_3240	0.74	+6.4
3,834,457	-		Sama_3240	0.75	+7.8
3,834,498	+		Sama_3240	0.78	+1.8
3,834,498	+		Sama_3240	0.78	+0.7
3,834,498	+		Sama_3240	0.78	+0.9
3,834,498	+		Sama_3240	0.78	-0.0
3,834,498	+		Sama_3240	0.78	+1.9
3,834,499	-		Sama_3240	0.78	+6.6
3,834,499	-		Sama_3240	0.78	+6.6
3,834,499	-		Sama_3240	0.78	+6.2
3,834,499	-		Sama_3240	0.78	+6.1
3,834,499	-		Sama_3240	0.78	+6.8
3,834,518	+		Sama_3240	0.79	-0.2
3,834,519	-		Sama_3240	0.80	+6.7
3,834,519	-		Sama_3240	0.80	+6.4
3,834,547	-		Sama_3240	0.82	+6.7
3,834,557	+		Sama_3240	0.82	-0.3
3,834,557	+		Sama_3240	0.82	+0.6
3,834,557	+		Sama_3240	0.82	+0.6
3,834,557	+		Sama_3240	0.82	+1.2
3,834,557	+		Sama_3240	0.82	+0.3
3,834,558	-		Sama_3240	0.82	+6.7
3,834,558	-		Sama_3240	0.82	+5.5
3,834,558	-		Sama_3240	0.82	+6.1
3,834,558	-		Sama_3240	0.82	+6.1
3,834,558	-		Sama_3240	0.82	+6.4
3,834,558	-		Sama_3240	0.82	+6.5
3,834,558	-		Sama_3240	0.82	+5.5
3,834,558	-		Sama_3240	0.82	+5.9
3,834,563	-		Sama_3240	0.83	+5.3
3,834,580	+		Sama_3240	0.84	+2.4
3,834,580	+		Sama_3240	0.84	+1.4
3,834,581	-		Sama_3240	0.84	+6.0
3,834,581	-		Sama_3240	0.84	+5.2
3,834,581	-		Sama_3240	0.84	+5.8
3,834,624	+		Sama_3240	0.87	+0.1
3,834,625	-		Sama_3240	0.87	+4.9
3,834,625	-		Sama_3240	0.87	+5.7
3,834,662	+				+2.7
3,834,662	+				+0.5
3,834,662	+				-2.4
3,834,662	+				-0.2
3,834,662	+				+0.8
3,834,663	-				+4.7
3,834,663	-				+5.7
3,834,674	+				+1.1
3,834,675	-				+6.5
3,834,675	-				+6.9
3,834,710	+				+2.2
3,834,711	-				+6.3
3,834,711	-				+6.2
3,834,718	-				+5.3
3,834,720	-				+5.1
3,834,720	-				+7.0
3,834,723	+				+1.2
3,834,724	-				+4.8
3,834,724	-				+6.7
3,834,811	+				+2.8
3,834,811	+				+2.9
3,834,811	+				+2.7
3,834,812	-				+7.0
3,834,905	-				+6.5
3,834,946	-				+7.4
3,834,997	-				+4.1
3,835,076	+				+0.8
3,835,167	+				+0.8
3,835,167	+				+0.4
3,835,168	-				+4.0
3,835,168	-				+4.3
3,835,182	+		Sama_3241	0.10	-0.1
3,835,220	+		Sama_3241	0.13	+0.7
3,835,220	+		Sama_3241	0.13	+0.7
3,835,220	+		Sama_3241	0.13	-0.1
3,835,221	-		Sama_3241	0.13	+2.7
3,835,221	-		Sama_3241	0.13	+2.7
3,835,221	-		Sama_3241	0.13	+2.4
3,835,221	-		Sama_3241	0.13	+3.6
3,835,221	-		Sama_3241	0.13	+2.6
3,835,222	+		Sama_3241	0.14	+0.9
3,835,222	+		Sama_3241	0.14	+1.0
3,835,223	-		Sama_3241	0.14	+3.1
3,835,223	-		Sama_3241	0.14	+4.1
3,835,223	-		Sama_3241	0.14	+2.5
3,835,347	-		Sama_3241	0.23	+4.0
3,835,377	+		Sama_3241	0.26	+0.6
3,835,377	+		Sama_3241	0.26	+1.7
3,835,377	+		Sama_3241	0.26	+0.6
3,835,378	-		Sama_3241	0.26	+4.4
3,835,405	+		Sama_3241	0.28	+0.7
3,835,405	+		Sama_3241	0.28	+0.1
3,835,405	+		Sama_3241	0.28	+0.9
3,835,405	+		Sama_3241	0.28	-0.8
3,835,406	-		Sama_3241	0.28	+3.8
3,835,406	-		Sama_3241	0.28	+4.1
3,835,406	-		Sama_3241	0.28	+3.9
3,835,423	+		Sama_3241	0.30	-0.3
3,835,423	+		Sama_3241	0.30	+0.4
3,835,423	+		Sama_3241	0.30	+0.9
3,835,456	+		Sama_3241	0.32	+0.9
3,835,456	+		Sama_3241	0.32	+0.1
3,835,456	+		Sama_3241	0.32	-1.1
3,835,456	+		Sama_3241	0.32	+0.8
3,835,457	-		Sama_3241	0.32	+1.5
3,835,464	+		Sama_3241	0.33	-0.1
3,835,464	+		Sama_3241	0.33	+0.6
3,835,465	-		Sama_3241	0.33	+4.0
3,835,465	-		Sama_3241	0.33	+3.2
3,835,560	+		Sama_3241	0.40	+0.7
3,835,560	+		Sama_3241	0.40	-0.2
3,835,561	-		Sama_3241	0.40	+3.0
3,835,566	+		Sama_3241	0.41	+0.3
3,835,566	+		Sama_3241	0.41	-1.1
3,835,566	+		Sama_3241	0.41	+0.2
3,835,566	+		Sama_3241	0.41	+0.1
3,835,567	-		Sama_3241	0.41	+3.7
3,835,583	+		Sama_3241	0.42	+0.1
3,835,583	+		Sama_3241	0.42	+0.2
3,835,584	-		Sama_3241	0.42	+4.0
3,835,631	+		Sama_3241	0.46	-0.1
3,835,631	+		Sama_3241	0.46	+0.3
3,835,631	+		Sama_3241	0.46	-0.3
3,835,631	+		Sama_3241	0.46	+0.1
3,835,631	+		Sama_3241	0.46	-0.7
3,835,631	+		Sama_3241	0.46	-1.0
3,835,631	+		Sama_3241	0.46	-0.3
3,835,631	+		Sama_3241	0.46	+1.6
3,835,631	+		Sama_3241	0.46	-0.5
3,835,632	-		Sama_3241	0.46	+1.5
3,835,632	-		Sama_3241	0.46	+1.5
3,835,632	-		Sama_3241	0.46	+1.9
3,835,632	-		Sama_3241	0.46	+2.2
3,835,632	-		Sama_3241	0.46	+1.1
3,835,632	-		Sama_3241	0.46	+2.2
3,835,632	-		Sama_3241	0.46	+0.9
3,835,718	+		Sama_3241	0.53	+0.4
3,835,718	+		Sama_3241	0.53	+1.1
3,835,719	-		Sama_3241	0.53	+1.2
3,835,719	-		Sama_3241	0.53	+1.0
3,835,719	-		Sama_3241	0.53	+0.9
3,835,719	-		Sama_3241	0.53	+2.2
3,835,722	+		Sama_3241	0.53	-1.6
3,835,722	+		Sama_3241	0.53	+0.1
3,835,722	+		Sama_3241	0.53	+0.7
3,835,722	+		Sama_3241	0.53	-0.0
3,835,722	+		Sama_3241	0.53	-1.6
3,835,722	+		Sama_3241	0.53	-0.0
3,835,722	+		Sama_3241	0.53	-0.7
3,835,722	+		Sama_3241	0.53	+0.9
3,835,722	+		Sama_3241	0.53	+1.1
3,835,722	+		Sama_3241	0.53	-0.2
3,835,722	+		Sama_3241	0.53	+0.7
3,835,722	+		Sama_3241	0.53	+0.6
3,835,722	+		Sama_3241	0.53	-0.3
3,835,723	-		Sama_3241	0.53	+0.4
3,835,723	-		Sama_3241	0.53	+0.5
3,835,723	-		Sama_3241	0.53	+1.8
3,835,723	-		Sama_3241	0.53	+1.5
3,835,723	-		Sama_3241	0.53	+1.4
3,835,723	-		Sama_3241	0.53	+1.0
3,835,723	-		Sama_3241	0.53	+0.1
3,835,723	-		Sama_3241	0.53	+1.7
3,835,723	-		Sama_3241	0.53	+1.0
3,835,723	-		Sama_3241	0.53	+0.8
3,835,723	-		Sama_3241	0.53	+1.9
3,835,723	-		Sama_3241	0.53	+1.2
3,835,723	-		Sama_3241	0.53	+0.8
3,835,726	+		Sama_3241	0.54	-0.1
3,835,726	+		Sama_3241	0.54	+0.2
3,835,726	+		Sama_3241	0.54	-0.7
3,835,726	+		Sama_3241	0.54	-0.3
3,835,726	+		Sama_3241	0.54	-0.3
3,835,726	+		Sama_3241	0.54	+0.8
3,835,726	+		Sama_3241	0.54	-0.4
3,835,726	+		Sama_3241	0.54	-0.1
3,835,726	+		Sama_3241	0.54	-1.0
3,835,726	+		Sama_3241	0.54	+0.3
3,835,726	+		Sama_3241	0.54	-1.5
3,835,726	+		Sama_3241	0.54	+0.5
3,835,726	+		Sama_3241	0.54	-0.3
3,835,726	+		Sama_3241	0.54	-0.6
3,835,727	-		Sama_3241	0.54	+0.8
3,835,727	-		Sama_3241	0.54	+1.1
3,835,727	-		Sama_3241	0.54	+2.2
3,835,727	-		Sama_3241	0.54	+1.5
3,835,727	-		Sama_3241	0.54	+1.5
3,835,727	-		Sama_3241	0.54	+1.4
3,835,727	-		Sama_3241	0.54	+1.2
3,835,727	-		Sama_3241	0.54	+1.2
3,835,727	-		Sama_3241	0.54	+0.6
3,835,727	-		Sama_3241	0.54	+1.2
3,835,727	-		Sama_3241	0.54	+1.2
3,835,727	-		Sama_3241	0.54	-0.0
3,835,727	-		Sama_3241	0.54	-0.1
3,835,756	+		Sama_3241	0.56	-0.7
3,835,757	-		Sama_3241	0.56	+0.0
3,835,757	-		Sama_3241	0.56	+0.4
3,835,757	-		Sama_3241	0.56	+1.1
3,835,767	+		Sama_3241	0.57	-0.0
3,835,768	-		Sama_3241	0.57	+1.4
3,835,768	-		Sama_3241	0.57	+0.6
3,835,768	-		Sama_3241	0.57	+1.2
3,835,771	+		Sama_3241	0.57	+0.5
3,835,771	+		Sama_3241	0.57	+1.4
3,835,771	+		Sama_3241	0.57	+0.5
3,835,771	+		Sama_3241	0.57	-1.2
3,835,772	-		Sama_3241	0.57	+1.9
3,835,772	-		Sama_3241	0.57	+0.7
3,835,801	+		Sama_3241	0.60	-0.4
3,835,801	+		Sama_3241	0.60	+0.5
3,835,801	+		Sama_3241	0.60	+0.4
3,835,802	-		Sama_3241	0.60	-0.2
3,835,802	-		Sama_3241	0.60	+1.9
3,835,802	-		Sama_3241	0.60	+0.2
3,835,854	-		Sama_3241	0.64	+0.8
3,835,863	-		Sama_3241	0.64	-0.1
3,835,884	+		Sama_3241	0.66	-0.5
3,835,884	+		Sama_3241	0.66	-0.6
3,835,885	-		Sama_3241	0.66	+0.5
3,835,979	+		Sama_3241	0.74	-1.0
3,835,995	+		Sama_3241	0.75	+0.2
3,835,995	+		Sama_3241	0.75	+0.3
3,835,996	-		Sama_3241	0.75	+0.7
3,836,044	+		Sama_3241	0.79	+0.0
3,836,045	-		Sama_3241	0.79	+1.7
3,836,047	-		Sama_3241	0.79	+1.1
3,836,047	-		Sama_3241	0.79	+1.4
3,836,047	-		Sama_3241	0.79	+1.5
3,836,088	+		Sama_3241	0.82	-0.1
3,836,088	+		Sama_3241	0.82	+1.1
3,836,089	-		Sama_3241	0.82	+0.3
3,836,108	+		Sama_3241	0.84	-0.2
3,836,108	+		Sama_3241	0.84	+0.5
3,836,108	+		Sama_3241	0.84	+0.4
3,836,108	+		Sama_3241	0.84	-0.2
3,836,109	-		Sama_3241	0.84	+0.7
3,836,109	-		Sama_3241	0.84	-0.5
3,836,137	-		Sama_3241	0.86	+0.5
3,836,185	+				-1.3
3,836,186	+				+0.1
3,836,186	+				-0.2
3,836,187	-				+1.1
3,836,197	+				-0.2
3,836,349	-				+1.8
3,836,349	-				+1.4
3,836,349	-				+1.0
3,836,471	+				-0.1
3,836,471	+				+0.8
3,836,471	+				+0.9
3,836,471	+				-0.1
3,836,471	+				+1.4
3,836,472	-				+0.8
3,836,472	-				+0.4
3,836,472	-				-0.7
3,836,472	-				-0.6
3,836,472	-				+0.9
3,836,472	-				+0.5
3,836,472	-				+0.8
3,836,472	-				-0.1
3,836,472	-				+0.9
3,836,472	-				+0.9
3,836,472	-				+0.8
3,836,475	+				+0.4
3,836,475	+				+0.6
3,836,475	+				+0.5
3,836,475	+				+1.5
3,836,475	+				+0.1
3,836,475	+				+1.1
3,836,475	+				+2.2
3,836,476	-				+0.4
3,836,476	-				+1.0
3,836,476	-				+1.3
3,836,476	-				-0.3
3,836,572	+		Sama_3242	0.11	+0.4
3,836,604	+		Sama_3242	0.12	+0.1
3,836,604	+		Sama_3242	0.12	+0.1
3,836,605	-		Sama_3242	0.12	-0.7
3,836,605	-		Sama_3242	0.12	-0.0
3,836,674	+		Sama_3242	0.15	+1.1
3,836,674	+		Sama_3242	0.15	-0.2
3,836,675	-		Sama_3242	0.15	-0.1
3,836,675	-		Sama_3242	0.15	+0.1
3,836,815	+		Sama_3242	0.21	+0.9
3,836,816	-		Sama_3242	0.21	-0.3
3,836,816	-		Sama_3242	0.21	+0.4
3,836,816	-		Sama_3242	0.21	-1.4
3,836,849	+		Sama_3242	0.23	+0.4
3,836,981	+		Sama_3242	0.28	-0.2
3,837,061	+		Sama_3242	0.32	+0.3
3,837,061	+		Sama_3242	0.32	+0.5
3,837,061	+		Sama_3242	0.32	-0.1
3,837,061	+		Sama_3242	0.32	+0.2
3,837,061	+		Sama_3242	0.32	-0.3
3,837,062	-		Sama_3242	0.32	+0.8
3,837,062	-		Sama_3242	0.32	+1.0
3,837,176	+		Sama_3242	0.37	-0.1
3,837,177	-		Sama_3242	0.37	-1.7
3,837,177	-		Sama_3242	0.37	+1.7
3,837,177	-		Sama_3242	0.37	+1.6
3,837,177	-		Sama_3242	0.37	-0.8
3,837,177	-		Sama_3242	0.37	+0.6
3,837,186	+		Sama_3242	0.37	+0.6
3,837,186	+		Sama_3242	0.37	+0.2
3,837,187	-		Sama_3242	0.37	-0.3
3,837,265	+		Sama_3242	0.40	+0.5
3,837,265	+		Sama_3242	0.40	-0.1
3,837,265	+		Sama_3242	0.40	+0.7