Strain Fitness in Shewanella amazonensis SB2B around Sama_1588

Experiment: copper (II) chloride 0.16 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	copper (II) chloride 0.16 mM
1,932,563	-	pepN	Sama_1586	0.88	+1.9
1,932,662	+				+0.1
1,932,681	-				+1.4
1,932,730	+				+1.3
1,932,843	+				+0.6
1,932,877	+				-0.7
1,932,880	-				-0.9
1,932,897	+				+0.4
1,932,898	-				+0.3
1,932,916	-				-1.6
1,932,916	-				+0.7
1,932,960	-				+0.7
1,932,988	+		Sama_1587	0.13	+0.1
1,933,055	+		Sama_1587	0.38	+0.7
1,933,223	+				-1.3
1,933,243	-				-1.6
1,933,490	+				+0.1
1,933,494	+				-0.5
1,933,496	+				+1.7
1,933,529	+				-0.1
1,933,529	+				+0.9
1,933,529	+				+1.3
1,933,530	-				-1.5
1,933,530	-				-0.2
1,933,530	-				+0.5
1,933,608	-				+1.0
1,933,608	-				+0.2
1,933,782	+		Sama_1588	0.12	-1.5
1,933,783	-		Sama_1588	0.12	-1.6
1,933,783	-		Sama_1588	0.12	-1.6
1,933,818	+		Sama_1588	0.14	+0.1
1,933,818	+		Sama_1588	0.14	-1.9
1,933,818	+		Sama_1588	0.14	-0.1
1,933,819	-		Sama_1588	0.14	+0.7
1,933,826	+		Sama_1588	0.14	-0.3
1,933,826	+		Sama_1588	0.14	-1.5
1,933,826	+		Sama_1588	0.14	-0.1
1,933,846	+		Sama_1588	0.15	+0.7
1,933,846	+		Sama_1588	0.15	+0.9
1,933,851	+		Sama_1588	0.15	-0.9
1,933,944	+		Sama_1588	0.20	-1.9
1,933,945	-		Sama_1588	0.20	+0.7
1,933,950	+		Sama_1588	0.20	+0.7
1,933,951	-		Sama_1588	0.20	-0.5
1,933,958	+		Sama_1588	0.20	-0.3
1,933,958	+		Sama_1588	0.20	+0.2
1,934,003	+		Sama_1588	0.23	+0.1
1,934,004	-		Sama_1588	0.23	-0.5
1,934,004	-		Sama_1588	0.23	+0.7
1,934,051	+		Sama_1588	0.25	-2.6
1,934,052	-		Sama_1588	0.25	-0.7
1,934,163	-		Sama_1588	0.30	+1.3
1,934,182	+		Sama_1588	0.31	-0.0
1,934,182	+		Sama_1588	0.31	-0.7
1,934,182	+		Sama_1588	0.31	+0.1
1,934,182	+		Sama_1588	0.31	+0.4
1,934,182	+		Sama_1588	0.31	-1.0
1,934,182	+		Sama_1588	0.31	+1.1
1,934,183	-		Sama_1588	0.31	+0.8
1,934,183	-		Sama_1588	0.31	+0.2
1,934,183	-		Sama_1588	0.31	+0.3
1,934,183	-		Sama_1588	0.31	+0.8
1,934,183	-		Sama_1588	0.31	-0.7
1,934,183	-		Sama_1588	0.31	+0.2
1,934,188	+		Sama_1588	0.32	+0.9
1,934,188	+		Sama_1588	0.32	-0.3
1,934,189	-		Sama_1588	0.32	+0.5
1,934,192	+		Sama_1588	0.32	+0.1
1,934,216	+		Sama_1588	0.33	+0.3
1,934,262	-		Sama_1588	0.35	-0.3
1,934,314	-		Sama_1588	0.38	+1.7
1,934,314	-		Sama_1588	0.38	-1.6
1,934,314	-		Sama_1588	0.38	+0.5
1,934,314	-		Sama_1588	0.38	+0.1
1,934,421	-		Sama_1588	0.43	-1.5
1,934,421	-		Sama_1588	0.43	+0.7
1,934,463	+		Sama_1588	0.45	-0.5
1,934,561	-		Sama_1588	0.50	+1.2
1,934,605	-		Sama_1588	0.52	-0.9
1,934,605	-		Sama_1588	0.52	+0.7
1,934,605	-		Sama_1588	0.52	+0.3
1,934,609	+		Sama_1588	0.52	-0.3
1,934,610	-		Sama_1588	0.52	+0.7
1,934,610	-		Sama_1588	0.52	-0.6
1,934,610	-		Sama_1588	0.52	+0.1
1,934,612	+		Sama_1588	0.52	-0.7
1,934,612	+		Sama_1588	0.52	+1.3
1,934,613	-		Sama_1588	0.52	-0.2
1,934,622	+		Sama_1588	0.52	+0.7
1,934,625	+		Sama_1588	0.53	-0.2
1,934,625	+		Sama_1588	0.53	+1.0
1,934,625	+		Sama_1588	0.53	-2.1
1,934,626	-		Sama_1588	0.53	-0.4
1,934,661	+		Sama_1588	0.54	-0.6
1,934,661	+		Sama_1588	0.54	-1.1
1,934,661	+		Sama_1588	0.54	-0.3
1,934,662	-		Sama_1588	0.54	-0.1
1,934,664	+		Sama_1588	0.54	-0.9
1,934,664	+		Sama_1588	0.54	+1.7
1,934,664	+		Sama_1588	0.54	+0.2
1,934,665	-		Sama_1588	0.55	-0.2
1,934,665	-		Sama_1588	0.55	-0.6
1,934,665	-		Sama_1588	0.55	-0.9
1,934,665	-		Sama_1588	0.55	+0.3
1,934,667	-		Sama_1588	0.55	+1.0
1,934,673	+		Sama_1588	0.55	+0.5
1,934,674	-		Sama_1588	0.55	-0.3
1,934,736	-		Sama_1588	0.58	+2.3
1,934,769	-		Sama_1588	0.60	+0.3
1,934,826	+		Sama_1588	0.62	+0.9
1,934,827	-		Sama_1588	0.62	-0.3
1,934,848	-		Sama_1588	0.63	-0.2
1,934,861	+		Sama_1588	0.64	+1.1
1,934,862	-		Sama_1588	0.64	-0.6
1,935,000	+		Sama_1588	0.71	+1.7
1,935,000	+		Sama_1588	0.71	-0.7
1,935,001	-		Sama_1588	0.71	+0.4
1,935,001	-		Sama_1588	0.71	+0.4
1,935,006	+		Sama_1588	0.71	-0.1
1,935,028	-		Sama_1588	0.72	+1.5
1,935,037	-		Sama_1588	0.72	-0.6
1,935,037	-		Sama_1588	0.72	+0.7
1,935,037	-		Sama_1588	0.72	-0.1
1,935,067	-		Sama_1588	0.74	-0.1
1,935,067	-		Sama_1588	0.74	+1.3
1,935,262	-		Sama_1588	0.83	-1.5
1,935,338	+		Sama_1588	0.87	-0.2
1,935,339	-		Sama_1588	0.87	-1.3
1,935,339	-		Sama_1588	0.87	+0.1
1,935,357	+		Sama_1588	0.88	+0.8
1,935,357	+		Sama_1588	0.88	+0.1
1,935,398	+		Sama_1588	0.90	+0.1
1,935,544	+				-0.5
1,935,544	+				+0.0
1,935,544	+				-1.1
1,935,544	+				-0.8
1,935,544	+				+0.3
1,935,545	-				+0.3
1,935,545	-				-0.7
1,935,545	-				+1.3
1,935,545	-				-0.3
1,935,545	-				+0.4
1,935,576	+				+1.1
1,935,576	+				-1.0
1,935,576	+				-0.1
1,935,590	+				-0.1
1,935,590	+				+0.4
1,935,591	-				-1.8
1,935,597	+				+0.1
1,935,597	+				+0.5
1,935,598	-				+0.1
1,935,598	-				-0.2
1,935,598	-				+0.3
1,935,598	-				+0.3
1,935,602	+				+1.4
1,935,602	+				+0.3
1,935,603	-				+0.4
1,935,606	+				+0.7
1,935,607	-				-2.6
1,935,617	-				+0.3
1,935,617	-				-1.0
1,935,814	-		Sama_1589	0.14	-0.3
1,935,844	-		Sama_1589	0.16	+0.7
1,935,844	-		Sama_1589	0.16	+0.2
1,935,864	+		Sama_1589	0.18	-2.1
1,935,864	+		Sama_1589	0.18	+3.5
1,935,864	+		Sama_1589	0.18	+1.2
1,935,865	-		Sama_1589	0.18	-1.5
1,935,865	-		Sama_1589	0.18	+0.7
1,935,865	-		Sama_1589	0.18	-0.2
1,935,881	+		Sama_1589	0.19	-0.5
1,935,882	-		Sama_1589	0.19	+1.1
1,935,894	+		Sama_1589	0.20	+1.0
1,935,894	+		Sama_1589	0.20	-1.6
1,935,894	+		Sama_1589	0.20	+0.3
1,935,895	-		Sama_1589	0.20	-0.6
1,935,939	+		Sama_1589	0.23	-0.5
1,936,006	-		Sama_1589	0.28	-2.1
1,936,063	+		Sama_1589	0.32	-0.8
1,936,082	+		Sama_1589	0.34	+0.4
1,936,131	-		Sama_1589	0.37	-0.4
1,936,131	-		Sama_1589	0.37	+0.4
1,936,202	+		Sama_1589	0.43	-0.1
1,936,202	+		Sama_1589	0.43	+0.2
1,936,202	+		Sama_1589	0.43	-0.3
1,936,202	+		Sama_1589	0.43	-0.9
1,936,203	-		Sama_1589	0.43	+0.9
1,936,395	+		Sama_1589	0.57	+0.4
1,936,395	+		Sama_1589	0.57	-1.3
1,936,395	+		Sama_1589	0.57	+0.8
1,936,396	-		Sama_1589	0.57	+0.8
1,936,396	-		Sama_1589	0.57	+1.0
1,936,396	-		Sama_1589	0.57	-0.6
1,936,397	+		Sama_1589	0.57	-0.1
1,936,398	-		Sama_1589	0.57	+0.4
1,936,488	+		Sama_1589	0.64	+0.1
1,936,493	+		Sama_1589	0.64	-0.3
1,936,493	+		Sama_1589	0.64	+1.4
1,936,493	+		Sama_1589	0.64	-0.1
1,936,494	-		Sama_1589	0.64	-0.1
1,936,570	-		Sama_1589	0.70	+0.8
1,936,596	+		Sama_1589	0.71	+1.8
1,936,597	-		Sama_1589	0.72	-0.3