Strain Fitness in Shewanella amazonensis SB2B around Sama_1579

Experiment: copper (II) chloride 0.16 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	copper (II) chloride 0.16 mM
1,921,446	+		Sama_1578	0.49	+0.4
1,921,481	-		Sama_1578	0.52	+0.5
1,921,636	+		Sama_1578	0.61	-2.9
1,921,803	+		Sama_1578	0.72	-0.5
1,921,804	-		Sama_1578	0.72	+0.1
1,921,807	+		Sama_1578	0.72	-0.3
1,921,807	+		Sama_1578	0.72	+0.9
1,921,816	+		Sama_1578	0.72	+0.2
1,921,900	+		Sama_1578	0.78	-0.3
1,921,988	+		Sama_1578	0.83	+1.3
1,921,988	+		Sama_1578	0.83	+0.7
1,922,114	+				-0.6
1,922,124	+				+0.9
1,922,124	+				+1.5
1,922,124	+				-0.0
1,922,124	+				-1.4
1,922,125	-				-0.2
1,922,132	+				+0.1
1,922,133	-				-0.6
1,922,140	+				+0.2
1,922,143	+				+0.1
1,922,143	+				+0.4
1,922,143	+				+0.3
1,922,144	-				-1.9
1,922,159	+				-0.1
1,922,160	-				+1.7
1,922,194	+				-1.3
1,922,321	+				+1.7
1,922,321	+				+0.4
1,922,322	-				-0.1
1,922,322	-				-0.9
1,922,324	+				+2.3
1,922,324	+				-1.5
1,922,325	-				+0.3
1,922,355	+				+0.7
1,922,356	-				-0.0
1,922,380	+				+1.1
1,922,381	-				-1.2
1,922,494	-				-3.2
1,922,521	+				-0.9
1,922,521	+				-1.2
1,922,742	-		Sama_1579	0.12	-1.9
1,922,742	-		Sama_1579	0.12	-2.1
1,922,763	+		Sama_1579	0.13	-2.6
1,922,763	+		Sama_1579	0.13	-2.5
1,922,764	-		Sama_1579	0.13	-0.1
1,922,826	-		Sama_1579	0.16	-0.4
1,922,912	-		Sama_1579	0.19	-1.1
1,922,951	-		Sama_1579	0.20	-1.2
1,923,000	-		Sama_1579	0.22	-1.3
1,923,009	-		Sama_1579	0.23	-3.2
1,923,009	-		Sama_1579	0.23	-1.4
1,923,014	+		Sama_1579	0.23	-2.9
1,923,015	-		Sama_1579	0.23	-0.9
1,923,015	-		Sama_1579	0.23	-2.3
1,923,015	-		Sama_1579	0.23	-3.6
1,923,183	-		Sama_1579	0.29	-1.3
1,923,246	+		Sama_1579	0.32	-0.8
1,923,272	-		Sama_1579	0.33	+0.7
1,923,343	-		Sama_1579	0.35	-0.3
1,923,343	-		Sama_1579	0.35	-1.0
1,923,351	+		Sama_1579	0.36	-3.0
1,923,388	-		Sama_1579	0.37	-0.9
1,923,427	+		Sama_1579	0.39	-2.9
1,923,427	+		Sama_1579	0.39	-1.6
1,923,427	+		Sama_1579	0.39	-2.1
1,923,428	-		Sama_1579	0.39	-0.7
1,923,428	-		Sama_1579	0.39	-2.9
1,923,443	+		Sama_1579	0.39	-0.9
1,923,552	-		Sama_1579	0.43	-1.5
1,923,701	+		Sama_1579	0.49	-0.8
1,923,705	+		Sama_1579	0.49	-1.3
1,923,739	+		Sama_1579	0.51	-1.9
1,923,740	-		Sama_1579	0.51	-2.9
1,923,740	-		Sama_1579	0.51	-3.6
1,923,813	+		Sama_1579	0.53	-2.1
1,923,813	+		Sama_1579	0.53	-2.1
1,923,813	+		Sama_1579	0.53	-2.6
1,923,824	-		Sama_1579	0.54	+1.7
1,923,824	-		Sama_1579	0.54	+0.7
1,923,868	-		Sama_1579	0.56	-1.9
1,923,872	-		Sama_1579	0.56	-0.9
1,923,872	-		Sama_1579	0.56	+0.1
1,923,872	-		Sama_1579	0.56	-1.6
1,923,872	-		Sama_1579	0.56	-3.1
1,923,872	-		Sama_1579	0.56	-1.6
1,923,872	-		Sama_1579	0.56	-0.9
1,923,872	-		Sama_1579	0.56	-1.6
1,923,872	-		Sama_1579	0.56	+0.9
1,923,894	+		Sama_1579	0.56	-1.6
1,923,895	-		Sama_1579	0.57	-2.0
1,923,895	-		Sama_1579	0.57	-0.1
1,923,895	-		Sama_1579	0.57	-2.8
1,923,895	-		Sama_1579	0.57	-2.1
1,923,895	-		Sama_1579	0.57	-3.2
1,923,895	-		Sama_1579	0.57	-3.3
1,923,895	-		Sama_1579	0.57	-0.9
1,923,923	+		Sama_1579	0.58	-0.3
1,923,924	-		Sama_1579	0.58	-0.6
1,923,924	-		Sama_1579	0.58	-2.0
1,923,956	-		Sama_1579	0.59	-1.3
1,923,979	-		Sama_1579	0.60	-1.3
1,923,979	-		Sama_1579	0.60	-1.1
1,924,055	-		Sama_1579	0.63	-2.6
1,924,074	+		Sama_1579	0.63	-0.6
1,924,149	-		Sama_1579	0.66	-2.1
1,924,150	+		Sama_1579	0.66	-2.1
1,924,151	-		Sama_1579	0.66	-3.0
1,924,344	+		Sama_1579	0.74	-2.1
1,924,344	+		Sama_1579	0.74	-2.0
1,924,345	-		Sama_1579	0.74	-2.1
1,924,345	-		Sama_1579	0.74	-2.6
1,924,372	-		Sama_1579	0.75	-0.9
1,924,419	-		Sama_1579	0.77	-0.3
1,924,431	+		Sama_1579	0.77	-0.9
1,924,473	-		Sama_1579	0.79	-2.2
1,924,655	+		Sama_1579	0.86	+0.7
1,924,656	-		Sama_1579	0.86	-2.1
1,924,656	-		Sama_1579	0.86	-0.3
1,924,670	-		Sama_1579	0.86	-0.9
1,924,714	+		Sama_1579	0.88	-2.6
1,924,746	-		Sama_1579	0.89	-0.8
1,924,812	+				-1.3
1,924,812	+				+1.5
1,924,813	-				-0.6
1,924,813	-				-1.3
1,924,845	-				-1.9
1,925,006	-				-0.5
1,925,023	-				-2.8
1,925,058	-				-1.3
1,925,158	+		Sama_1580	0.22	+0.1
1,925,159	-		Sama_1580	0.22	-1.2
1,925,227	+		Sama_1580	0.33	-1.6
1,925,228	-		Sama_1580	0.33	+0.3
1,925,292	+		Sama_1580	0.43	-2.1
1,925,292	+		Sama_1580	0.43	-0.8
1,925,293	-		Sama_1580	0.44	-0.3
1,925,293	-		Sama_1580	0.44	-1.9
1,925,293	-		Sama_1580	0.44	-0.3
1,925,333	-		Sama_1580	0.50	-0.9
1,925,360	-		Sama_1580	0.54	-0.9
1,925,404	+		Sama_1580	0.61	-2.5
1,925,405	-		Sama_1580	0.61	-1.1
1,925,405	-		Sama_1580	0.61	-1.6
1,925,423	-		Sama_1580	0.64	-3.0
1,925,452	-		Sama_1580	0.69	-1.2
1,925,466	-		Sama_1580	0.71	-1.3
1,925,467	+		Sama_1580	0.71	-0.3
1,925,471	+		Sama_1580	0.72	-2.5
1,925,471	+		Sama_1580	0.72	-0.3
1,925,472	-		Sama_1580	0.72	-0.3
1,925,489	-		Sama_1580	0.75	-0.9
1,925,489	-		Sama_1580	0.75	-0.3
1,925,520	+		Sama_1580	0.80	-1.3
1,925,536	+		Sama_1580	0.82	-2.6
1,925,587	+				-2.3
1,925,588	-				+0.1
1,925,588	-				-2.5
1,925,588	-				-1.3
1,925,592	-				-0.3
1,925,798	-		Sama_1581	0.24	-1.1
1,925,844	+		Sama_1581	0.31	-2.6
1,925,852	+		Sama_1581	0.33	-0.6
1,925,852	+		Sama_1581	0.33	-0.5
1,925,852	+		Sama_1581	0.33	-0.7
1,925,852	+		Sama_1581	0.33	-1.3
1,925,853	-		Sama_1581	0.33	-0.6
1,925,854	+		Sama_1581	0.33	-1.6
1,925,854	+		Sama_1581	0.33	-1.1
1,925,854	+		Sama_1581	0.33	-1.9
1,925,854	+		Sama_1581	0.33	-0.3
1,925,855	-		Sama_1581	0.33	-2.0
1,925,855	-		Sama_1581	0.33	-1.2
1,925,928	+		Sama_1581	0.44	-0.9
1,925,940	+		Sama_1581	0.46	-1.5
1,925,940	+		Sama_1581	0.46	-2.3
1,925,941	-		Sama_1581	0.46	-1.3
1,925,941	-		Sama_1581	0.46	-0.9