Strain Fitness in Shewanella amazonensis SB2B around Sama_1494

Experiment: copper (II) chloride 0.16 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	copper (II) chloride 0.16 mM
1,806,693	+				+0.4
1,806,693	+				+0.0
1,806,693	+				-1.1
1,806,696	+				-0.6
1,806,696	+				+0.1
1,806,696	+				+0.5
1,806,696	+				+0.9
1,806,697	-				+2.5
1,806,697	-				-0.0
1,806,806	+				+0.3
1,806,931	-		Sama_1493	0.17	+0.0
1,806,975	+		Sama_1493	0.27	-0.7
1,806,976	-		Sama_1493	0.27	-0.4
1,807,076	+		Sama_1493	0.50	+0.5
1,807,077	-		Sama_1493	0.50	-1.3
1,807,100	+		Sama_1493	0.55	-0.2
1,807,100	+		Sama_1493	0.55	-0.0
1,807,174	+		Sama_1493	0.72	+0.6
1,807,174	+		Sama_1493	0.72	-1.5
1,807,174	+		Sama_1493	0.72	-0.3
1,807,175	-		Sama_1493	0.72	+1.4
1,807,175	-		Sama_1493	0.72	-1.1
1,807,326	-				+1.4
1,807,352	-				-0.7
1,807,398	+				-0.7
1,807,398	+				-0.0
1,807,425	-				-1.2
1,807,466	+				-1.4
1,807,467	-				+0.3
1,807,547	+				-0.2
1,807,599	+				-2.3
1,807,600	-				-0.5
1,807,617	+				-1.0
1,807,617	+				-0.4
1,807,687	+				-0.2
1,807,687	+				+0.6
1,807,688	-				+1.3
1,807,688	-				-0.1
1,807,690	+				+1.3
1,807,690	+				+0.7
1,807,691	-				-0.3
1,807,710	-				-1.8
1,807,729	+				-0.7
1,807,796	+				-1.0
1,807,805	+				-2.8
1,807,805	+				-2.5
1,807,805	+				+0.3
1,807,806	-				-0.9
1,807,838	+				-1.4
1,807,839	-				-0.3
1,807,840	+				-1.6
1,807,840	+				-1.1
1,807,840	+				-0.4
1,807,841	-				-2.0
1,807,841	-				+1.7
1,807,841	-				-0.9
1,807,841	-				-2.4
1,807,841	-				-1.7
1,807,841	-				-2.3
1,807,951	+		Sama_1494	0.12	-0.3
1,807,952	-		Sama_1494	0.12	-2.1
1,807,952	-		Sama_1494	0.12	-0.3
1,808,007	-		Sama_1494	0.15	+0.7
1,808,059	+		Sama_1494	0.17	-2.1
1,808,059	+		Sama_1494	0.17	+0.1
1,808,060	-		Sama_1494	0.17	-0.3
1,808,064	+		Sama_1494	0.18	+2.0
1,808,064	+		Sama_1494	0.18	-1.3
1,808,064	+		Sama_1494	0.18	-0.4
1,808,065	-		Sama_1494	0.18	-0.2
1,808,065	-		Sama_1494	0.18	-0.7
1,808,176	+		Sama_1494	0.23	-0.6
1,808,177	-		Sama_1494	0.23	-0.9
1,808,246	+		Sama_1494	0.26	-1.1
1,808,247	-		Sama_1494	0.26	-2.1
1,808,274	-		Sama_1494	0.27	-0.6
1,808,302	-		Sama_1494	0.29	-1.6
1,808,302	-		Sama_1494	0.29	-1.3
1,808,305	-		Sama_1494	0.29	+0.3
1,808,305	-		Sama_1494	0.29	-2.1
1,808,305	-		Sama_1494	0.29	-1.2
1,808,305	-		Sama_1494	0.29	-0.9
1,808,305	-		Sama_1494	0.29	+0.1
1,808,347	-		Sama_1494	0.31	-0.8
1,808,429	-		Sama_1494	0.35	-0.9
1,808,505	+		Sama_1494	0.38	+0.5
1,808,506	-		Sama_1494	0.38	-0.3
1,808,510	+		Sama_1494	0.38	-0.9
1,808,510	+		Sama_1494	0.38	-0.4
1,808,532	+		Sama_1494	0.39	-0.6
1,808,608	-		Sama_1494	0.43	-0.9
1,808,642	+		Sama_1494	0.45	-0.9
1,808,650	+		Sama_1494	0.45	-0.5
1,808,740	+		Sama_1494	0.49	-0.6
1,808,740	+		Sama_1494	0.49	-0.5
1,808,741	-		Sama_1494	0.49	+0.4
1,808,741	-		Sama_1494	0.49	-2.1
1,808,741	-		Sama_1494	0.49	+3.3
1,808,805	-		Sama_1494	0.52	+0.7
1,808,805	-		Sama_1494	0.52	-1.2
1,808,835	+		Sama_1494	0.54	-0.9
1,808,836	-		Sama_1494	0.54	-0.7
1,808,840	+		Sama_1494	0.54	-0.3
1,808,840	+		Sama_1494	0.54	+0.1
1,808,887	-		Sama_1494	0.56	+0.7
1,808,905	+		Sama_1494	0.57	-1.7
1,809,065	+		Sama_1494	0.64	-1.0
1,809,163	+		Sama_1494	0.69	-0.3
1,809,460	+		Sama_1494	0.83	-1.9
1,809,460	+		Sama_1494	0.83	-2.3
1,809,460	+		Sama_1494	0.83	-1.3
1,809,461	-		Sama_1494	0.83	-0.1
1,809,461	-		Sama_1494	0.83	-2.5
1,809,461	-		Sama_1494	0.83	-0.7
1,809,461	-		Sama_1494	0.83	-1.1
1,809,461	-		Sama_1494	0.83	-0.5
1,809,732	+				-0.8
1,809,732	+				-0.9
1,809,733	-				-0.7
1,809,827	+				-1.3
1,809,827	+				-0.3
1,809,827	+				-2.3
1,809,827	+				+0.6
1,809,827	+				-0.7
1,809,828	-				+1.1
1,809,828	-				-0.7
1,809,828	-				-0.3
1,809,828	-				-1.1
1,809,832	+				-1.3
1,809,839	+				+0.7
1,809,839	+				-2.1
1,809,840	-				-1.3
1,809,877	+				+0.1
1,809,921	-				-2.0
1,809,921	-				-0.9
1,809,921	-				-0.9
1,810,009	-				-1.9
1,810,139	-		Sama_1495	0.18	-2.1
1,810,170	+		Sama_1495	0.21	-1.6
1,810,170	+		Sama_1495	0.21	-1.9
1,810,170	+		Sama_1495	0.21	-0.6
1,810,170	+		Sama_1495	0.21	+0.3
1,810,172	+		Sama_1495	0.21	-0.2
1,810,185	-		Sama_1495	0.22	-0.9
1,810,185	-		Sama_1495	0.22	-2.1
1,810,185	-		Sama_1495	0.22	-1.7
1,810,185	-		Sama_1495	0.22	-2.6
1,810,367	+		Sama_1495	0.37	-0.5
1,810,367	+		Sama_1495	0.37	-0.9
1,810,368	-		Sama_1495	0.37	-1.0
1,810,438	-		Sama_1495	0.43	-0.9
1,810,448	-		Sama_1495	0.44	-0.1
1,810,474	+		Sama_1495	0.46	-1.9
1,810,534	+		Sama_1495	0.51	-0.2
1,810,558	+		Sama_1495	0.53	-2.6
1,810,613	+		Sama_1495	0.58	-0.0
1,810,634	+		Sama_1495	0.60	-1.6
1,810,635	-		Sama_1495	0.60	-0.9
1,810,635	-		Sama_1495	0.60	-1.3
1,810,635	-		Sama_1495	0.60	-0.8
1,810,638	+		Sama_1495	0.60	+0.2
1,810,638	+		Sama_1495	0.60	+0.7
1,810,638	+		Sama_1495	0.60	-0.4
1,810,639	-		Sama_1495	0.60	-2.1
1,810,639	-		Sama_1495	0.60	-2.8
1,810,639	-		Sama_1495	0.60	-0.7
1,810,639	-		Sama_1495	0.60	-1.6
1,810,640	+		Sama_1495	0.60	-0.3
1,810,640	+		Sama_1495	0.60	-1.3
1,810,641	-		Sama_1495	0.60	+0.7
1,810,657	-		Sama_1495	0.61	+0.7
1,810,750	-		Sama_1495	0.69	-1.3