Strain Fitness in Shewanella amazonensis SB2B around Sama_0904

Experiment: copper (II) chloride 0.16 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	copper (II) chloride 0.16 mM
1,090,197	+				-0.3
1,090,244	+				+1.0
1,090,244	+				-1.7
1,090,264	+				-0.5
1,090,265	-				+0.1
1,090,265	-				+0.3
1,090,265	-				+0.3
1,090,265	-				+0.7
1,090,305	+				+0.4
1,090,305	+				+0.3
1,090,306	-				-0.4
1,090,306	-				-1.0
1,090,306	-				+1.4
1,090,317	+				-0.1
1,090,317	+				-0.2
1,090,337	+				+0.1
1,090,337	+				+0.2
1,090,337	+				-1.0
1,090,338	-				-0.6
1,090,338	-				+1.5
1,090,338	-				+1.1
1,090,355	+				-0.3
1,090,355	+				+0.0
1,090,355	+				-0.5
1,090,355	+				-1.4
1,090,355	+				-0.3
1,090,355	+				+0.2
1,090,355	+				-0.5
1,090,355	+				+0.2
1,090,356	-				+2.2
1,090,356	-				+0.9
1,090,356	-				-0.1
1,090,356	-				-1.5
1,090,356	-				-0.7
1,090,356	-				+0.3
1,090,356	-				+0.6
1,090,356	-				-2.1
1,090,356	-				+0.2
1,090,356	-				-1.3
1,090,356	-				-1.4
1,090,356	-				-0.9
1,090,374	+				-0.6
1,090,375	+				-1.1
1,090,375	+				+0.5
1,090,376	-				-0.7
1,090,376	-				+0.2
1,090,376	-				+1.0
1,090,378	+				-0.3
1,090,378	+				+0.1
1,090,379	-				-0.7
1,090,379	-				-2.1
1,090,379	-				+0.4
1,090,408	+				-0.1
1,090,413	+		Sama_0902	0.11	-1.9
1,090,459	-		Sama_0902	0.27	-0.3
1,090,465	+		Sama_0902	0.29	-1.6
1,090,466	-		Sama_0902	0.29	-1.2
1,090,533	-		Sama_0902	0.52	+0.6
1,090,594	+		Sama_0902	0.72	-0.8
1,090,595	-		Sama_0902	0.73	+0.4
1,090,595	-		Sama_0902	0.73	-0.9
1,090,598	+		Sama_0902	0.74	-0.6
1,090,598	+		Sama_0902	0.74	-1.2
1,090,599	-		Sama_0902	0.74	-0.4
1,090,599	-		Sama_0902	0.74	-1.3
1,090,635	+		Sama_0902	0.86	-2.1
1,090,636	-		Sama_0902	0.87	-0.1
1,090,650	+				+0.2
1,090,650	+				-0.7
1,090,651	-				-2.3
1,090,651	-				-0.9
1,090,651	-				-0.0
1,090,677	+				-0.7
1,090,697	+				+0.9
1,090,697	+				-0.7
1,090,698	-				-1.8
1,090,737	+		Sama_0903	0.16	-0.4
1,090,738	-		Sama_0903	0.16	+0.5
1,090,746	+		Sama_0903	0.19	-0.2
1,090,747	-		Sama_0903	0.19	+0.7
1,090,761	-		Sama_0903	0.22	-0.0
1,090,774	+		Sama_0903	0.26	+1.6
1,090,845	+		Sama_0903	0.45	-0.1
1,090,845	+		Sama_0903	0.45	-0.6
1,090,846	-		Sama_0903	0.45	-1.1
1,090,920	+		Sama_0903	0.65	+0.9
1,090,920	+		Sama_0903	0.65	+0.3
1,090,920	+		Sama_0903	0.65	-1.3
1,090,920	+		Sama_0903	0.65	+0.7
1,090,949	+		Sama_0903	0.72	-0.3
1,090,949	+		Sama_0903	0.72	-0.1
1,090,949	+		Sama_0903	0.72	+0.8
1,090,950	-		Sama_0903	0.72	-0.7
1,090,950	-		Sama_0903	0.72	-0.3
1,090,950	-		Sama_0903	0.72	+0.1
1,091,034	+				+0.7
1,091,034	+				+0.8
1,091,034	+				+0.5
1,091,035	-				-0.1
1,091,053	+				+1.9
1,091,053	+				+0.4
1,091,053	+				+0.2
1,091,053	+				-0.5
1,091,053	+				-0.4
1,091,053	+				+0.1
1,091,053	+				+0.2
1,091,053	+				-0.4
1,091,053	+				+2.2
1,091,053	+				+1.4
1,091,053	+				+0.7
1,091,053	+				+1.2
1,091,053	+				-0.1
1,091,054	-				+1.2
1,091,054	-				-0.4
1,091,054	-				-0.1
1,091,054	-				-0.9
1,091,054	-				-0.3
1,091,055	+				-0.8
1,091,055	+				-0.1
1,091,055	+				+1.1
1,091,055	+				+0.9
1,091,055	+				-0.4
1,091,055	+				+0.2
1,091,055	+				-0.3
1,091,055	+				+1.0
1,091,055	+				+0.1
1,091,055	+				+0.0
1,091,055	+				+0.9
1,091,055	+				-0.1
1,091,055	+				+0.8
1,091,055	+				-0.7
1,091,055	+				-0.7
1,091,055	+				+1.2
1,091,056	-				-0.7
1,091,056	-				+0.4
1,091,056	-				+1.0
1,091,056	-				-1.0
1,091,056	-				-0.2
1,091,056	-				-0.9
1,091,056	-				-0.6
1,091,072	+				+0.2
1,091,095	+				-0.0
1,091,097	+				-1.3
1,091,097	+				+0.1
1,091,097	+				+0.6
1,091,098	-				-0.2
1,091,098	-				-0.6
1,091,098	-				+0.9
1,091,098	-				-0.4
1,091,098	-				-1.0
1,091,100	+				+0.4
1,091,100	+				-0.3
1,091,101	-				-0.2
1,091,145	+				+0.5
1,091,151	+				+1.6
1,091,155	-				-0.7
1,091,166	-				-2.1
1,091,166	-				-0.2
1,091,197	+				+0.3
1,091,329	+		Sama_0904	0.26	+1.1
1,091,329	+		Sama_0904	0.26	+1.3
1,091,330	-		Sama_0904	0.26	+1.0
1,091,366	+		Sama_0904	0.32	+1.3
1,091,366	+		Sama_0904	0.32	-0.0
1,091,367	-		Sama_0904	0.32	+1.1
1,091,367	-		Sama_0904	0.32	+1.4
1,091,375	+		Sama_0904	0.33	+0.4
1,091,376	-		Sama_0904	0.33	+0.8
1,091,429	+		Sama_0904	0.42	+0.6
1,091,513	+		Sama_0904	0.56	+0.9
1,091,513	+		Sama_0904	0.56	-0.2
1,091,514	-		Sama_0904	0.56	+0.5
1,091,514	-		Sama_0904	0.56	+1.7
1,091,514	-		Sama_0904	0.56	-0.1
1,091,525	-		Sama_0904	0.58	+0.7
1,091,571	+		Sama_0904	0.65	+1.5
1,091,571	+		Sama_0904	0.65	+1.9
1,091,571	+		Sama_0904	0.65	+1.1
1,091,580	+		Sama_0904	0.67	+1.3
1,091,580	+		Sama_0904	0.67	-0.2
1,091,581	-		Sama_0904	0.67	-0.5
1,091,581	-		Sama_0904	0.67	+0.9
1,091,597	+		Sama_0904	0.70	+0.7
1,091,597	+		Sama_0904	0.70	+0.5
1,091,597	+		Sama_0904	0.70	+0.4
1,091,598	-		Sama_0904	0.70	+0.4
1,091,629	+		Sama_0904	0.75	+0.9
1,091,630	-		Sama_0904	0.75	+1.0
1,091,630	-		Sama_0904	0.75	+1.0
1,091,682	+		Sama_0904	0.83	+1.4
1,091,682	+		Sama_0904	0.83	+0.0
1,091,683	-		Sama_0904	0.84	+1.3
1,091,745	+				+1.1
1,091,745	+				+0.1
1,091,745	+				+1.3
1,091,746	-				+1.7
1,091,782	+				+0.7
1,091,783	-				-0.5
1,091,783	-				-0.9
1,091,794	-				+2.7
1,091,812	+				+0.9
1,091,812	+				+1.2
1,091,813	-				+0.0
1,091,813	-				-1.3
1,091,813	-				+0.2
1,091,813	-				-0.6
1,091,813	-				+1.5
1,091,813	-				+0.1
1,091,815	+				+0.9
1,091,815	+				+0.1
1,091,815	+				+0.8
1,091,816	-				+0.1
1,091,816	-				+0.3
1,091,816	-				-0.8
1,091,827	+				+0.0
1,091,828	-				-0.4
1,091,845	+				+0.3
1,091,846	-				-0.2
1,091,860	+				+0.5
1,091,866	-				-1.7
1,091,894	-				-0.3
1,091,899	+				+0.7
1,091,911	+				+0.7
1,091,912	-				-2.6
1,091,917	+				-0.0
1,091,917	+				-0.9
1,091,917	+				+0.3
1,091,917	+				-0.9
1,091,918	-				-1.7
1,092,015	-				-1.4
1,092,019	+				+0.4
1,092,020	-				-0.4
1,092,034	-				-0.9
1,092,061	-				+0.4
1,092,070	-				+0.4
1,092,091	+				+0.2
1,092,092	-				-2.1
1,092,180	+				+0.1
1,092,180	+				+0.5
1,092,206	+				-1.0
1,092,206	+				-1.0
1,092,206	+				+0.9
1,092,206	+				+0.5
1,092,206	+				+1.3
1,092,206	+				+0.2
1,092,206	+				+2.0
1,092,207	-				-1.7
1,092,207	-				+0.6
1,092,208	+				-0.4
1,092,208	+				+0.4
1,092,208	+				+0.5
1,092,208	+				-0.1
1,092,208	+				-0.7
1,092,208	+				+0.6
1,092,208	+				-1.1
1,092,208	+				+0.1
1,092,209	-				-0.7
1,092,209	-				-0.1
1,092,209	-				+0.4
1,092,209	-				+0.5
1,092,209	-				+0.9
1,092,209	-				-0.2
1,092,222	+				-0.2
1,092,222	+				-1.8
1,092,223	-				-0.1
1,092,223	-				+0.7
1,092,223	-				-0.6
1,092,225	+				-0.7
1,092,225	+				+1.2
1,092,225	+				-0.0
1,092,226	-				-0.7
1,092,232	+				+0.5
1,092,232	+				-0.4
1,092,233	-				-0.4
1,092,235	+				-0.4
1,092,235	+				-0.1
1,092,235	+				-0.5
1,092,236	-				+1.1
1,092,236	-				+2.5
1,092,236	-				-2.1
1,092,238	+				+0.6
1,092,238	+				+0.9
1,092,238	+				-0.4
1,092,238	+				-0.7
1,092,238	+				-0.1
1,092,238	+				+0.5
1,092,241	+				+0.8
1,092,241	+				-0.7
1,092,241	+				+0.7
1,092,242	-				+1.5
1,092,242	-				-1.1
1,092,242	-				+0.2
1,092,242	-				+1.9
1,092,278	+				-1.0
1,092,300	-				+0.5
1,092,300	-				+0.3
1,092,361	+				-0.6
1,092,361	+				-1.4
1,092,362	-				+0.5
1,092,422	-				-1.1
1,092,616	-	thrA	Sama_0905	0.10	-0.9
1,092,721	-	thrA	Sama_0905	0.14	-0.1
1,092,721	-	thrA	Sama_0905	0.14	-0.0
1,092,721	-	thrA	Sama_0905	0.14	-0.5