Experiment: copper (II) chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0587 and Sama_0588 are separated by 3 nucleotides Sama_0588 and Sama_0589 are separated by 54 nucleotides Sama_0589 and Sama_0590 are separated by 255 nucleotides
Sama_0587: Sama_0587 - PepSY-associated TM helix (RefSeq), at 733,548 to 734,306
_0587
Sama_0588: Sama_0588 - FMN-binding (RefSeq), at 734,310 to 734,819
_0588
Sama_0589: Sama_0589 - phosphate-selective porin O and P (RefSeq), at 734,874 to 736,049
_0589
Sama_0590: Sama_0590 - putative TonB-dependent receptor protein (RefSeq), at 736,305 to 738,518
_0590
Position (kb) 734
735
736
737 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 733.914 kb on + strand, within Sama_0587 at 733.915 kb on - strand, within Sama_0587 at 733.942 kb on + strand, within Sama_0587 at 733.943 kb on - strand, within Sama_0587 at 733.943 kb on - strand, within Sama_0587 at 733.943 kb on - strand, within Sama_0587 at 733.943 kb on - strand, within Sama_0587 at 734.024 kb on + strand, within Sama_0587 at 734.024 kb on + strand, within Sama_0587 at 734.024 kb on + strand, within Sama_0587 at 734.025 kb on - strand, within Sama_0587 at 734.062 kb on + strand, within Sama_0587 at 734.063 kb on - strand, within Sama_0587 at 734.063 kb on - strand, within Sama_0587 at 734.063 kb on - strand, within Sama_0587 at 734.104 kb on + strand, within Sama_0587 at 734.104 kb on + strand, within Sama_0587 at 734.105 kb on - strand, within Sama_0587 at 734.105 kb on - strand, within Sama_0587 at 734.107 kb on + strand, within Sama_0587 at 734.107 kb on + strand, within Sama_0587 at 734.116 kb on - strand, within Sama_0587 at 734.170 kb on - strand, within Sama_0587 at 734.176 kb on - strand, within Sama_0587 at 734.217 kb on - strand, within Sama_0587 at 734.276 kb on + strand at 734.277 kb on - strand at 734.286 kb on - strand at 734.341 kb on + strand at 734.341 kb on + strand at 734.341 kb on + strand at 734.341 kb on + strand at 734.342 kb on - strand at 734.342 kb on - strand at 734.376 kb on + strand, within Sama_0588 at 734.409 kb on - strand, within Sama_0588 at 734.503 kb on + strand, within Sama_0588 at 734.503 kb on + strand, within Sama_0588 at 734.504 kb on - strand, within Sama_0588 at 734.505 kb on + strand, within Sama_0588 at 734.506 kb on - strand, within Sama_0588 at 734.506 kb on - strand, within Sama_0588 at 734.511 kb on + strand, within Sama_0588 at 734.512 kb on - strand, within Sama_0588 at 734.512 kb on - strand, within Sama_0588 at 734.526 kb on + strand, within Sama_0588 at 734.527 kb on - strand, within Sama_0588 at 734.527 kb on - strand, within Sama_0588 at 734.561 kb on + strand, within Sama_0588 at 734.562 kb on - strand, within Sama_0588 at 734.562 kb on - strand, within Sama_0588 at 734.620 kb on + strand, within Sama_0588 at 734.626 kb on - strand, within Sama_0588 at 734.641 kb on + strand, within Sama_0588 at 734.642 kb on - strand, within Sama_0588 at 734.682 kb on - strand, within Sama_0588 at 734.748 kb on - strand, within Sama_0588 at 734.809 kb on + strand at 734.809 kb on + strand at 734.810 kb on - strand at 734.810 kb on - strand at 734.839 kb on + strand at 734.839 kb on + strand at 734.840 kb on - strand at 734.851 kb on + strand at 734.851 kb on + strand at 734.862 kb on + strand at 734.863 kb on - strand at 734.863 kb on - strand at 734.867 kb on - strand at 734.867 kb on - strand at 734.867 kb on - strand at 734.885 kb on - strand at 734.953 kb on - strand at 734.953 kb on - strand at 734.974 kb on + strand at 734.975 kb on - strand at 734.981 kb on + strand at 734.981 kb on - strand at 734.982 kb on - strand at 734.982 kb on - strand at 734.982 kb on - strand at 734.982 kb on - strand at 734.985 kb on + strand at 734.985 kb on + strand at 734.985 kb on + strand at 734.985 kb on + strand at 734.985 kb on + strand at 734.986 kb on - strand at 734.986 kb on - strand at 734.986 kb on - strand at 734.986 kb on - strand at 734.986 kb on - strand at 735.098 kb on - strand, within Sama_0589 at 735.098 kb on - strand, within Sama_0589 at 735.163 kb on + strand, within Sama_0589 at 735.164 kb on - strand, within Sama_0589 at 735.164 kb on - strand, within Sama_0589 at 735.180 kb on - strand, within Sama_0589 at 735.180 kb on - strand, within Sama_0589 at 735.180 kb on - strand, within Sama_0589 at 735.180 kb on - strand, within Sama_0589 at 735.197 kb on - strand, within Sama_0589 at 735.201 kb on - strand, within Sama_0589 at 735.237 kb on + strand, within Sama_0589 at 735.238 kb on - strand, within Sama_0589 at 735.248 kb on + strand, within Sama_0589 at 735.331 kb on + strand, within Sama_0589 at 735.331 kb on + strand, within Sama_0589 at 735.332 kb on - strand, within Sama_0589 at 735.332 kb on - strand, within Sama_0589 at 735.332 kb on - strand, within Sama_0589 at 735.382 kb on - strand, within Sama_0589 at 735.382 kb on - strand, within Sama_0589 at 735.388 kb on + strand, within Sama_0589 at 735.388 kb on + strand, within Sama_0589 at 735.389 kb on - strand, within Sama_0589 at 735.389 kb on - strand, within Sama_0589 at 735.389 kb on - strand, within Sama_0589 at 735.492 kb on + strand, within Sama_0589 at 735.493 kb on - strand, within Sama_0589 at 735.493 kb on - strand, within Sama_0589 at 735.495 kb on + strand, within Sama_0589 at 735.495 kb on + strand, within Sama_0589 at 735.495 kb on + strand, within Sama_0589 at 735.495 kb on + strand, within Sama_0589 at 735.495 kb on + strand, within Sama_0589 at 735.495 kb on + strand, within Sama_0589 at 735.496 kb on - strand, within Sama_0589 at 735.496 kb on - strand, within Sama_0589 at 735.496 kb on - strand, within Sama_0589 at 735.496 kb on - strand, within Sama_0589 at 735.496 kb on - strand, within Sama_0589 at 735.496 kb on - strand, within Sama_0589 at 735.496 kb on - strand, within Sama_0589 at 735.496 kb on - strand, within Sama_0589 at 735.515 kb on + strand, within Sama_0589 at 735.515 kb on + strand, within Sama_0589 at 735.516 kb on - strand, within Sama_0589 at 735.516 kb on - strand, within Sama_0589 at 735.529 kb on + strand, within Sama_0589 at 735.529 kb on + strand, within Sama_0589 at 735.529 kb on + strand, within Sama_0589 at 735.529 kb on + strand, within Sama_0589 at 735.593 kb on + strand, within Sama_0589 at 735.593 kb on + strand, within Sama_0589 at 735.594 kb on - strand, within Sama_0589 at 735.594 kb on - strand, within Sama_0589 at 735.594 kb on - strand, within Sama_0589 at 735.594 kb on - strand, within Sama_0589 at 735.603 kb on - strand, within Sama_0589 at 735.603 kb on - strand, within Sama_0589 at 735.628 kb on + strand, within Sama_0589 at 735.628 kb on + strand, within Sama_0589 at 735.628 kb on + strand, within Sama_0589 at 735.628 kb on + strand, within Sama_0589 at 735.629 kb on - strand, within Sama_0589 at 735.629 kb on - strand, within Sama_0589 at 735.629 kb on - strand, within Sama_0589 at 735.714 kb on - strand, within Sama_0589 at 735.714 kb on - strand, within Sama_0589 at 735.714 kb on - strand, within Sama_0589 at 735.742 kb on - strand, within Sama_0589 at 735.808 kb on + strand, within Sama_0589 at 735.808 kb on + strand, within Sama_0589 at 735.808 kb on + strand, within Sama_0589 at 735.808 kb on + strand, within Sama_0589 at 735.808 kb on + strand, within Sama_0589 at 735.808 kb on + strand, within Sama_0589 at 735.809 kb on - strand, within Sama_0589 at 735.809 kb on - strand, within Sama_0589 at 736.065 kb on + strand at 736.066 kb on - strand at 736.068 kb on + strand at 736.069 kb on - strand at 736.189 kb on - strand at 736.274 kb on + strand at 736.275 kb on - strand at 736.331 kb on + strand at 736.332 kb on - strand at 736.383 kb on - strand at 736.384 kb on + strand at 736.384 kb on + strand at 736.384 kb on + strand at 736.384 kb on + strand at 736.384 kb on + strand at 736.384 kb on + strand at 736.384 kb on + strand at 736.384 kb on + strand at 736.385 kb on - strand at 736.385 kb on - strand at 736.417 kb on + strand at 736.418 kb on - strand at 736.418 kb on - strand at 736.433 kb on + strand at 736.433 kb on + strand at 736.439 kb on + strand at 736.445 kb on - strand at 736.445 kb on - strand at 736.455 kb on + strand at 736.537 kb on + strand, within Sama_0590 at 736.537 kb on + strand, within Sama_0590 at 736.538 kb on - strand, within Sama_0590 at 736.538 kb on - strand, within Sama_0590 at 736.591 kb on + strand, within Sama_0590 at 736.592 kb on - strand, within Sama_0590 at 736.592 kb on - strand, within Sama_0590 at 736.592 kb on - strand, within Sama_0590 at 736.592 kb on - strand, within Sama_0590 at 736.612 kb on + strand, within Sama_0590 at 736.612 kb on + strand, within Sama_0590 at 736.612 kb on + strand, within Sama_0590 at 736.613 kb on - strand, within Sama_0590 at 736.613 kb on - strand, within Sama_0590 at 736.613 kb on - strand, within Sama_0590 at 736.693 kb on + strand, within Sama_0590 at 736.693 kb on + strand, within Sama_0590 at 736.693 kb on + strand, within Sama_0590 at 736.694 kb on - strand, within Sama_0590 at 736.694 kb on - strand, within Sama_0590 at 736.694 kb on - strand, within Sama_0590 at 736.694 kb on - strand, within Sama_0590 at 736.694 kb on - strand, within Sama_0590 at 736.697 kb on + strand, within Sama_0590 at 736.697 kb on + strand, within Sama_0590 at 736.698 kb on - strand, within Sama_0590 at 736.698 kb on - strand, within Sama_0590 at 736.698 kb on - strand, within Sama_0590 at 736.699 kb on + strand, within Sama_0590 at 736.699 kb on + strand, within Sama_0590 at 736.700 kb on - strand, within Sama_0590 at 736.700 kb on - strand, within Sama_0590 at 736.700 kb on - strand, within Sama_0590 at 736.748 kb on - strand, within Sama_0590 at 736.795 kb on + strand, within Sama_0590 at 736.795 kb on + strand, within Sama_0590 at 736.795 kb on + strand, within Sama_0590 at 736.795 kb on + strand, within Sama_0590 at 736.796 kb on - strand, within Sama_0590 at 736.796 kb on - strand, within Sama_0590 at 736.796 kb on - strand, within Sama_0590 at 736.861 kb on + strand, within Sama_0590 at 736.861 kb on + strand, within Sama_0590 at 736.861 kb on + strand, within Sama_0590 at 736.862 kb on - strand, within Sama_0590 at 736.862 kb on - strand, within Sama_0590 at 736.870 kb on + strand, within Sama_0590
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 0.16 mM remove 733,914 + Sama_0587 0.48 -1.6 733,915 - Sama_0587 0.48 -2.2 733,942 + Sama_0587 0.52 -1.0 733,943 - Sama_0587 0.52 -2.8 733,943 - Sama_0587 0.52 -2.2 733,943 - Sama_0587 0.52 -0.9 733,943 - Sama_0587 0.52 -0.6 734,024 + Sama_0587 0.63 -1.7 734,024 + Sama_0587 0.63 -2.6 734,024 + Sama_0587 0.63 -3.0 734,025 - Sama_0587 0.63 -1.0 734,062 + Sama_0587 0.68 -1.8 734,063 - Sama_0587 0.68 -1.5 734,063 - Sama_0587 0.68 -2.0 734,063 - Sama_0587 0.68 -1.6 734,104 + Sama_0587 0.73 -1.7 734,104 + Sama_0587 0.73 -1.0 734,105 - Sama_0587 0.73 -0.2 734,105 - Sama_0587 0.73 -2.7 734,107 + Sama_0587 0.74 -1.5 734,107 + Sama_0587 0.74 -3.4 734,116 - Sama_0587 0.75 -1.0 734,170 - Sama_0587 0.82 -0.0 734,176 - Sama_0587 0.83 -2.0 734,217 - Sama_0587 0.88 -1.0 734,276 + -1.8 734,277 - -0.0 734,286 - -1.6 734,341 + -3.5 734,341 + -0.9 734,341 + -1.0 734,341 + -1.6 734,342 - -1.0 734,342 - -1.2 734,376 + Sama_0588 0.13 -0.6 734,409 - Sama_0588 0.19 -3.3 734,503 + Sama_0588 0.38 -1.5 734,503 + Sama_0588 0.38 -0.6 734,504 - Sama_0588 0.38 -2.0 734,505 + Sama_0588 0.38 -0.0 734,506 - Sama_0588 0.38 -2.0 734,506 - Sama_0588 0.38 -2.6 734,511 + Sama_0588 0.39 -3.1 734,512 - Sama_0588 0.40 -1.5 734,512 - Sama_0588 0.40 -2.7 734,526 + Sama_0588 0.42 -0.9 734,527 - Sama_0588 0.43 -3.4 734,527 - Sama_0588 0.43 -1.0 734,561 + Sama_0588 0.49 -1.0 734,562 - Sama_0588 0.49 -3.5 734,562 - Sama_0588 0.49 -2.7 734,620 + Sama_0588 0.61 -2.0 734,626 - Sama_0588 0.62 -2.3 734,641 + Sama_0588 0.65 -1.9 734,642 - Sama_0588 0.65 -2.9 734,682 - Sama_0588 0.73 -1.8 734,748 - Sama_0588 0.86 +0.6 734,809 + -1.0 734,809 + -0.3 734,810 - -2.5 734,810 - -0.5 734,839 + -1.3 734,839 + -2.0 734,840 - +0.5 734,851 + -3.1 734,851 + -1.0 734,862 + +0.2 734,863 - -2.5 734,863 - -1.7 734,867 - -2.6 734,867 - -1.6 734,867 - -2.0 734,885 - -1.5 734,953 - -0.2 734,953 - -2.5 734,974 + -1.0 734,975 - -2.3 734,981 + -3.4 734,981 - -1.6 734,982 - -2.4 734,982 - -1.1 734,982 - -2.2 734,982 - -1.8 734,985 + -1.0 734,985 + -0.2 734,985 + -1.6 734,985 + -1.0 734,985 + -2.8 734,986 - -1.5 734,986 - -2.3 734,986 - -1.3 734,986 - -3.2 734,986 - -1.8 735,098 - Sama_0589 0.19 -1.3 735,098 - Sama_0589 0.19 -1.8 735,163 + Sama_0589 0.25 -2.8 735,164 - Sama_0589 0.25 -3.0 735,164 - Sama_0589 0.25 -1.2 735,180 - Sama_0589 0.26 -2.6 735,180 - Sama_0589 0.26 -2.0 735,180 - Sama_0589 0.26 -1.6 735,180 - Sama_0589 0.26 -3.8 735,197 - Sama_0589 0.27 -2.2 735,201 - Sama_0589 0.28 -3.5 735,237 + Sama_0589 0.31 -1.0 735,238 - Sama_0589 0.31 -1.0 735,248 + Sama_0589 0.32 -1.7 735,331 + Sama_0589 0.39 -2.0 735,331 + Sama_0589 0.39 -3.1 735,332 - Sama_0589 0.39 -0.6 735,332 - Sama_0589 0.39 -1.6 735,332 - Sama_0589 0.39 -1.1 735,382 - Sama_0589 0.43 -1.8 735,382 - Sama_0589 0.43 -1.2 735,388 + Sama_0589 0.44 -1.8 735,388 + Sama_0589 0.44 -1.0 735,389 - Sama_0589 0.44 -1.0 735,389 - Sama_0589 0.44 -2.9 735,389 - Sama_0589 0.44 -2.1 735,492 + Sama_0589 0.53 -1.8 735,493 - Sama_0589 0.53 -1.6 735,493 - Sama_0589 0.53 +0.2 735,495 + Sama_0589 0.53 -2.0 735,495 + Sama_0589 0.53 -3.2 735,495 + Sama_0589 0.53 -2.6 735,495 + Sama_0589 0.53 -2.2 735,495 + Sama_0589 0.53 -1.3 735,495 + Sama_0589 0.53 +1.3 735,496 - Sama_0589 0.53 -0.0 735,496 - Sama_0589 0.53 -1.6 735,496 - Sama_0589 0.53 -2.8 735,496 - Sama_0589 0.53 -0.0 735,496 - Sama_0589 0.53 -2.8 735,496 - Sama_0589 0.53 -3.8 735,496 - Sama_0589 0.53 -2.0 735,496 - Sama_0589 0.53 -1.3 735,515 + Sama_0589 0.55 -1.6 735,515 + Sama_0589 0.55 +0.2 735,516 - Sama_0589 0.55 -2.5 735,516 - Sama_0589 0.55 -1.7 735,529 + Sama_0589 0.56 -1.3 735,529 + Sama_0589 0.56 -0.0 735,529 + Sama_0589 0.56 -0.3 735,529 + Sama_0589 0.56 -0.6 735,593 + Sama_0589 0.61 +2.6 735,593 + Sama_0589 0.61 -2.3 735,594 - Sama_0589 0.61 -1.6 735,594 - Sama_0589 0.61 -2.5 735,594 - Sama_0589 0.61 -0.0 735,594 - Sama_0589 0.61 -2.9 735,603 - Sama_0589 0.62 +1.0 735,603 - Sama_0589 0.62 -1.5 735,628 + Sama_0589 0.64 -2.7 735,628 + Sama_0589 0.64 -0.8 735,628 + Sama_0589 0.64 -0.9 735,628 + Sama_0589 0.64 -2.1 735,629 - Sama_0589 0.64 +0.4 735,629 - Sama_0589 0.64 -3.3 735,629 - Sama_0589 0.64 -1.0 735,714 - Sama_0589 0.71 -2.0 735,714 - Sama_0589 0.71 -2.6 735,714 - Sama_0589 0.71 -2.2 735,742 - Sama_0589 0.74 -2.7 735,808 + Sama_0589 0.79 -0.6 735,808 + Sama_0589 0.79 -0.8 735,808 + Sama_0589 0.79 -1.5 735,808 + Sama_0589 0.79 -0.3 735,808 + Sama_0589 0.79 -2.0 735,808 + Sama_0589 0.79 -2.2 735,809 - Sama_0589 0.80 -1.3 735,809 - Sama_0589 0.80 -3.6 736,065 + -1.6 736,066 - -1.5 736,068 + -1.2 736,069 - -1.5 736,189 - +1.3 736,274 + -1.0 736,275 - -2.2 736,331 + -1.3 736,332 - -1.1 736,383 - -1.7 736,384 + -0.1 736,384 + +0.7 736,384 + -1.6 736,384 + +0.1 736,384 + -0.8 736,384 + +0.2 736,384 + -0.8 736,384 + -1.0 736,385 - -0.0 736,385 - -0.3 736,417 + +0.5 736,418 - -1.4 736,418 - -0.6 736,433 + +0.5 736,433 + -0.0 736,439 + -0.3 736,445 - -1.3 736,445 - -0.2 736,455 + -0.8 736,537 + Sama_0590 0.10 -1.0 736,537 + Sama_0590 0.10 +0.1 736,538 - Sama_0590 0.11 +0.8 736,538 - Sama_0590 0.11 -1.4 736,591 + Sama_0590 0.13 +1.0 736,592 - Sama_0590 0.13 -1.0 736,592 - Sama_0590 0.13 -0.6 736,592 - Sama_0590 0.13 -1.0 736,592 - Sama_0590 0.13 -1.1 736,612 + Sama_0590 0.14 +0.3 736,612 + Sama_0590 0.14 +0.2 736,612 + Sama_0590 0.14 +0.7 736,613 - Sama_0590 0.14 -0.8 736,613 - Sama_0590 0.14 -0.6 736,613 - Sama_0590 0.14 +0.3 736,693 + Sama_0590 0.18 -0.5 736,693 + Sama_0590 0.18 -0.3 736,693 + Sama_0590 0.18 -0.5 736,694 - Sama_0590 0.18 -1.7 736,694 - Sama_0590 0.18 -0.1 736,694 - Sama_0590 0.18 -1.6 736,694 - Sama_0590 0.18 -1.4 736,694 - Sama_0590 0.18 +0.1 736,697 + Sama_0590 0.18 -1.4 736,697 + Sama_0590 0.18 -2.0 736,698 - Sama_0590 0.18 -0.6 736,698 - Sama_0590 0.18 -0.9 736,698 - Sama_0590 0.18 +1.4 736,699 + Sama_0590 0.18 +0.2 736,699 + Sama_0590 0.18 +0.2 736,700 - Sama_0590 0.18 -0.8 736,700 - Sama_0590 0.18 +0.3 736,700 - Sama_0590 0.18 -0.4 736,748 - Sama_0590 0.20 -0.4 736,795 + Sama_0590 0.22 +0.3 736,795 + Sama_0590 0.22 -0.8 736,795 + Sama_0590 0.22 +0.4 736,795 + Sama_0590 0.22 +0.3 736,796 - Sama_0590 0.22 +0.4 736,796 - Sama_0590 0.22 -1.5 736,796 - Sama_0590 0.22 -0.4 736,861 + Sama_0590 0.25 +1.0 736,861 + Sama_0590 0.25 -0.4 736,861 + Sama_0590 0.25 +0.5 736,862 - Sama_0590 0.25 -0.9 736,862 - Sama_0590 0.25 -0.7 736,870 + Sama_0590 0.26 -0.1
Or see this region's nucleotide sequence