Experiment: copper (II) chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0262 and Sama_0263 are separated by 68 nucleotides Sama_0263 and Sama_0264 are separated by 25 nucleotides Sama_0264 and rpoZ are separated by 24 nucleotides rpoZ and gmk are separated by 77 nucleotides
Sama_0262: Sama_0262 - tRNA guanosine-2'-O-methyltransferase (RefSeq), at 301,630 to 302,355
_0262
Sama_0263: Sama_0263 - YjgF-like protein (RefSeq), at 302,424 to 302,807
_0263
Sama_0264: Sama_0264 - bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (RefSeq), at 302,833 to 304,932
_0264
Sama_0265: rpoZ - DNA-directed RNA polymerase subunit omega (RefSeq), at 304,957 to 305,235
rpoZ
Sama_0266: gmk - guanylate kinase (RefSeq), at 305,313 to 305,936
gmk
Position (kb) 302
303
304
305 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 301.844 kb on + strand, within Sama_0262 at 301.844 kb on + strand, within Sama_0262 at 301.844 kb on + strand, within Sama_0262 at 301.844 kb on + strand, within Sama_0262 at 301.844 kb on + strand, within Sama_0262 at 301.844 kb on + strand, within Sama_0262 at 301.844 kb on + strand, within Sama_0262 at 301.844 kb on + strand, within Sama_0262 at 301.844 kb on + strand, within Sama_0262 at 301.844 kb on + strand, within Sama_0262 at 301.844 kb on + strand, within Sama_0262 at 301.844 kb on + strand, within Sama_0262 at 301.844 kb on + strand, within Sama_0262 at 301.844 kb on + strand, within Sama_0262 at 301.845 kb on - strand, within Sama_0262 at 301.845 kb on - strand, within Sama_0262 at 301.845 kb on - strand, within Sama_0262 at 301.845 kb on - strand, within Sama_0262 at 301.845 kb on - strand, within Sama_0262 at 301.845 kb on - strand, within Sama_0262 at 301.845 kb on - strand, within Sama_0262 at 301.845 kb on - strand, within Sama_0262 at 301.845 kb on - strand, within Sama_0262 at 301.845 kb on - strand, within Sama_0262 at 301.855 kb on - strand, within Sama_0262 at 301.885 kb on + strand, within Sama_0262 at 301.886 kb on - strand, within Sama_0262 at 301.942 kb on - strand, within Sama_0262 at 302.006 kb on - strand, within Sama_0262 at 302.022 kb on + strand, within Sama_0262 at 302.023 kb on - strand, within Sama_0262 at 302.023 kb on - strand, within Sama_0262 at 302.027 kb on + strand, within Sama_0262 at 302.027 kb on + strand, within Sama_0262 at 302.027 kb on + strand, within Sama_0262 at 302.085 kb on + strand, within Sama_0262 at 302.085 kb on + strand, within Sama_0262 at 302.085 kb on + strand, within Sama_0262 at 302.085 kb on + strand, within Sama_0262 at 302.085 kb on + strand, within Sama_0262 at 302.086 kb on - strand, within Sama_0262 at 302.086 kb on - strand, within Sama_0262 at 302.086 kb on - strand, within Sama_0262 at 302.086 kb on - strand, within Sama_0262 at 302.086 kb on - strand, within Sama_0262 at 302.086 kb on - strand, within Sama_0262 at 302.086 kb on - strand, within Sama_0262 at 302.086 kb on - strand, within Sama_0262 at 302.143 kb on - strand, within Sama_0262 at 302.287 kb on + strand at 302.288 kb on - strand at 302.288 kb on - strand at 302.288 kb on - strand at 302.371 kb on + strand at 302.371 kb on + strand at 302.371 kb on + strand at 302.371 kb on + strand at 302.372 kb on - strand at 302.425 kb on + strand at 302.425 kb on + strand at 302.425 kb on + strand at 302.425 kb on + strand at 302.425 kb on + strand at 302.425 kb on + strand at 302.426 kb on - strand at 302.426 kb on - strand at 302.426 kb on - strand at 302.504 kb on - strand, within Sama_0263 at 302.518 kb on + strand, within Sama_0263 at 302.573 kb on + strand, within Sama_0263 at 302.573 kb on + strand, within Sama_0263 at 302.573 kb on + strand, within Sama_0263 at 302.573 kb on + strand, within Sama_0263 at 302.574 kb on - strand, within Sama_0263 at 302.574 kb on - strand, within Sama_0263 at 302.619 kb on + strand, within Sama_0263 at 302.619 kb on + strand, within Sama_0263 at 302.620 kb on - strand, within Sama_0263 at 302.620 kb on - strand, within Sama_0263 at 302.620 kb on - strand, within Sama_0263 at 302.620 kb on - strand, within Sama_0263 at 302.640 kb on + strand, within Sama_0263 at 302.640 kb on + strand, within Sama_0263 at 302.640 kb on + strand, within Sama_0263 at 302.719 kb on + strand, within Sama_0263 at 302.719 kb on + strand, within Sama_0263 at 302.719 kb on + strand, within Sama_0263 at 302.720 kb on - strand, within Sama_0263 at 302.720 kb on - strand, within Sama_0263 at 302.720 kb on - strand, within Sama_0263 at 302.726 kb on + strand, within Sama_0263 at 302.727 kb on - strand, within Sama_0263 at 302.739 kb on + strand, within Sama_0263 at 302.740 kb on - strand, within Sama_0263 at 302.740 kb on - strand, within Sama_0263 at 302.740 kb on - strand, within Sama_0263 at 302.752 kb on + strand, within Sama_0263 at 302.752 kb on + strand, within Sama_0263 at 302.752 kb on + strand, within Sama_0263 at 302.753 kb on - strand, within Sama_0263 at 302.756 kb on + strand, within Sama_0263 at 302.807 kb on + strand at 302.807 kb on + strand at 302.807 kb on + strand at 302.807 kb on + strand at 302.808 kb on - strand at 302.808 kb on - strand at 302.820 kb on + strand at 302.820 kb on + strand at 302.821 kb on - strand at 302.904 kb on + strand at 302.904 kb on + strand at 302.904 kb on + strand at 302.939 kb on + strand at 302.939 kb on + strand at 302.939 kb on + strand at 302.939 kb on + strand at 302.940 kb on - strand at 302.940 kb on - strand at 302.940 kb on - strand at 302.946 kb on + strand at 302.946 kb on + strand at 302.946 kb on + strand at 302.946 kb on + strand at 302.947 kb on - strand at 302.947 kb on - strand at 302.947 kb on - strand at 302.974 kb on - strand at 303.065 kb on + strand, within Sama_0264 at 303.066 kb on - strand, within Sama_0264 at 303.085 kb on - strand, within Sama_0264 at 303.104 kb on + strand, within Sama_0264 at 303.104 kb on + strand, within Sama_0264 at 303.104 kb on + strand, within Sama_0264 at 303.104 kb on + strand, within Sama_0264 at 303.104 kb on + strand, within Sama_0264 at 303.104 kb on + strand, within Sama_0264 at 303.104 kb on + strand, within Sama_0264 at 303.104 kb on + strand, within Sama_0264 at 303.104 kb on + strand, within Sama_0264 at 303.104 kb on + strand, within Sama_0264 at 303.105 kb on - strand, within Sama_0264 at 303.105 kb on - strand, within Sama_0264 at 303.105 kb on - strand, within Sama_0264 at 303.105 kb on - strand, within Sama_0264 at 303.105 kb on - strand, within Sama_0264 at 303.105 kb on - strand, within Sama_0264 at 303.105 kb on - strand, within Sama_0264 at 303.105 kb on - strand, within Sama_0264 at 303.105 kb on - strand, within Sama_0264 at 303.105 kb on - strand, within Sama_0264 at 303.105 kb on - strand, within Sama_0264 at 303.158 kb on - strand, within Sama_0264 at 303.329 kb on - strand, within Sama_0264 at 303.329 kb on - strand, within Sama_0264 at 303.329 kb on - strand, within Sama_0264 at 303.329 kb on - strand, within Sama_0264 at 303.329 kb on - strand, within Sama_0264 at 303.329 kb on - strand, within Sama_0264 at 303.353 kb on - strand, within Sama_0264 at 303.353 kb on - strand, within Sama_0264 at 303.353 kb on - strand, within Sama_0264 at 303.353 kb on - strand, within Sama_0264 at 303.399 kb on + strand, within Sama_0264 at 303.399 kb on + strand, within Sama_0264 at 303.459 kb on + strand, within Sama_0264 at 303.459 kb on + strand, within Sama_0264 at 303.460 kb on - strand, within Sama_0264 at 303.511 kb on + strand, within Sama_0264 at 303.765 kb on - strand, within Sama_0264 at 304.136 kb on - strand, within Sama_0264 at 304.912 kb on + strand at 304.913 kb on - strand at 304.929 kb on - strand at 304.929 kb on - strand at 304.940 kb on - strand at 304.959 kb on - strand at 304.959 kb on - strand at 305.218 kb on + strand at 305.219 kb on - strand at 305.219 kb on - strand at 305.219 kb on - strand at 305.225 kb on - strand at 305.238 kb on - strand at 305.238 kb on - strand at 305.263 kb on - strand at 305.263 kb on - strand at 305.301 kb on - strand at 305.301 kb on - strand at 305.305 kb on + strand at 305.305 kb on + strand at 305.306 kb on - strand at 305.306 kb on - strand at 305.306 kb on - strand at 305.333 kb on + strand at 305.334 kb on - strand at 305.339 kb on + strand at 305.339 kb on + strand at 305.339 kb on + strand at 305.339 kb on + strand at 305.340 kb on - strand at 305.340 kb on - strand at 305.373 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 0.16 mM remove 301,844 + Sama_0262 0.29 -0.5 301,844 + Sama_0262 0.29 -0.1 301,844 + Sama_0262 0.29 -0.5 301,844 + Sama_0262 0.29 -0.5 301,844 + Sama_0262 0.29 +0.2 301,844 + Sama_0262 0.29 +0.9 301,844 + Sama_0262 0.29 +0.6 301,844 + Sama_0262 0.29 -0.8 301,844 + Sama_0262 0.29 +0.2 301,844 + Sama_0262 0.29 +1.0 301,844 + Sama_0262 0.29 +0.3 301,844 + Sama_0262 0.29 -0.3 301,844 + Sama_0262 0.29 -1.0 301,844 + Sama_0262 0.29 -0.2 301,845 - Sama_0262 0.30 +0.3 301,845 - Sama_0262 0.30 +0.1 301,845 - Sama_0262 0.30 -1.2 301,845 - Sama_0262 0.30 +0.3 301,845 - Sama_0262 0.30 +0.5 301,845 - Sama_0262 0.30 -0.3 301,845 - Sama_0262 0.30 -1.2 301,845 - Sama_0262 0.30 +0.1 301,845 - Sama_0262 0.30 +0.3 301,845 - Sama_0262 0.30 -1.5 301,855 - Sama_0262 0.31 -2.8 301,885 + Sama_0262 0.35 -0.8 301,886 - Sama_0262 0.35 -0.4 301,942 - Sama_0262 0.43 -0.5 302,006 - Sama_0262 0.52 -2.1 302,022 + Sama_0262 0.54 +0.3 302,023 - Sama_0262 0.54 -0.1 302,023 - Sama_0262 0.54 +1.4 302,027 + Sama_0262 0.55 +0.5 302,027 + Sama_0262 0.55 -0.0 302,027 + Sama_0262 0.55 +0.1 302,085 + Sama_0262 0.63 -0.1 302,085 + Sama_0262 0.63 -0.9 302,085 + Sama_0262 0.63 +1.2 302,085 + Sama_0262 0.63 -1.4 302,085 + Sama_0262 0.63 +2.7 302,086 - Sama_0262 0.63 -0.4 302,086 - Sama_0262 0.63 -1.2 302,086 - Sama_0262 0.63 -0.5 302,086 - Sama_0262 0.63 -1.0 302,086 - Sama_0262 0.63 +0.2 302,086 - Sama_0262 0.63 -1.2 302,086 - Sama_0262 0.63 -0.0 302,086 - Sama_0262 0.63 -0.7 302,143 - Sama_0262 0.71 +0.8 302,287 + +1.8 302,288 - +0.4 302,288 - +0.3 302,288 - +0.4 302,371 + -0.1 302,371 + -0.7 302,371 + +0.0 302,371 + -0.8 302,372 - -0.2 302,425 + +0.5 302,425 + -0.6 302,425 + -1.5 302,425 + -1.7 302,425 + -0.1 302,425 + +1.1 302,426 - -0.9 302,426 - -1.2 302,426 - +0.3 302,504 - Sama_0263 0.21 +0.1 302,518 + Sama_0263 0.24 -0.9 302,573 + Sama_0263 0.39 -1.7 302,573 + Sama_0263 0.39 -1.9 302,573 + Sama_0263 0.39 -1.7 302,573 + Sama_0263 0.39 -0.6 302,574 - Sama_0263 0.39 -0.7 302,574 - Sama_0263 0.39 -0.5 302,619 + Sama_0263 0.51 -3.0 302,619 + Sama_0263 0.51 -1.1 302,620 - Sama_0263 0.51 -1.6 302,620 - Sama_0263 0.51 -1.2 302,620 - Sama_0263 0.51 -1.2 302,620 - Sama_0263 0.51 -1.9 302,640 + Sama_0263 0.56 -2.0 302,640 + Sama_0263 0.56 -1.8 302,640 + Sama_0263 0.56 -1.2 302,719 + Sama_0263 0.77 +0.5 302,719 + Sama_0263 0.77 -1.2 302,719 + Sama_0263 0.77 +1.7 302,720 - Sama_0263 0.77 -1.6 302,720 - Sama_0263 0.77 -1.6 302,720 - Sama_0263 0.77 -2.5 302,726 + Sama_0263 0.79 -3.3 302,727 - Sama_0263 0.79 -1.9 302,739 + Sama_0263 0.82 -1.7 302,740 - Sama_0263 0.82 -2.2 302,740 - Sama_0263 0.82 +0.1 302,740 - Sama_0263 0.82 -2.6 302,752 + Sama_0263 0.85 -3.0 302,752 + Sama_0263 0.85 +0.8 302,752 + Sama_0263 0.85 -0.5 302,753 - Sama_0263 0.86 -1.0 302,756 + Sama_0263 0.86 -0.8 302,807 + -1.5 302,807 + -0.5 302,807 + -0.8 302,807 + -1.3 302,808 - -0.2 302,808 - -1.1 302,820 + -1.1 302,820 + -0.3 302,821 - -2.1 302,904 + +1.6 302,904 + +2.4 302,904 + +2.0 302,939 + +2.0 302,939 + +2.2 302,939 + +0.1 302,939 + +1.1 302,940 - +1.1 302,940 - +2.5 302,940 - -1.5 302,946 + +1.9 302,946 + +2.0 302,946 + +1.3 302,946 + +1.7 302,947 - +1.8 302,947 - +2.5 302,947 - +1.9 302,974 - +1.3 303,065 + Sama_0264 0.11 -0.5 303,066 - Sama_0264 0.11 +1.2 303,085 - Sama_0264 0.12 +2.2 303,104 + Sama_0264 0.13 +1.7 303,104 + Sama_0264 0.13 +1.5 303,104 + Sama_0264 0.13 +2.0 303,104 + Sama_0264 0.13 +2.4 303,104 + Sama_0264 0.13 +2.5 303,104 + Sama_0264 0.13 +2.0 303,104 + Sama_0264 0.13 +0.9 303,104 + Sama_0264 0.13 +2.3 303,104 + Sama_0264 0.13 +0.5 303,104 + Sama_0264 0.13 +1.7 303,105 - Sama_0264 0.13 +2.1 303,105 - Sama_0264 0.13 +3.3 303,105 - Sama_0264 0.13 +4.0 303,105 - Sama_0264 0.13 +1.9 303,105 - Sama_0264 0.13 +2.9 303,105 - Sama_0264 0.13 +1.1 303,105 - Sama_0264 0.13 +3.5 303,105 - Sama_0264 0.13 +2.2 303,105 - Sama_0264 0.13 +2.6 303,105 - Sama_0264 0.13 +1.6 303,105 - Sama_0264 0.13 +1.3 303,158 - Sama_0264 0.15 +0.7 303,329 - Sama_0264 0.24 +2.3 303,329 - Sama_0264 0.24 +2.5 303,329 - Sama_0264 0.24 +2.8 303,329 - Sama_0264 0.24 +2.4 303,329 - Sama_0264 0.24 +2.1 303,329 - Sama_0264 0.24 +1.9 303,353 - Sama_0264 0.25 +2.2 303,353 - Sama_0264 0.25 +2.4 303,353 - Sama_0264 0.25 +1.9 303,353 - Sama_0264 0.25 +1.7 303,399 + Sama_0264 0.27 +2.5 303,399 + Sama_0264 0.27 +2.4 303,459 + Sama_0264 0.30 +2.5 303,459 + Sama_0264 0.30 +2.7 303,460 - Sama_0264 0.30 +3.0 303,511 + Sama_0264 0.32 +2.7 303,765 - Sama_0264 0.44 +2.6 304,136 - Sama_0264 0.62 -1.2 304,912 + +0.9 304,913 - +1.1 304,929 - +1.9 304,929 - +2.4 304,940 - +2.5 304,959 - +0.6 304,959 - +0.2 305,218 + -0.5 305,219 - -0.0 305,219 - +0.2 305,219 - +0.6 305,225 - -0.3 305,238 - +0.4 305,238 - +0.4 305,263 - -1.0 305,263 - -0.9 305,301 - -0.2 305,301 - -0.0 305,305 + +1.5 305,305 + +2.2 305,306 - -1.6 305,306 - -1.5 305,306 - -0.3 305,333 + -0.0 305,334 - -1.1 305,339 + +1.1 305,339 + +1.1 305,339 + -0.4 305,339 + -0.7 305,340 - -0.2 305,340 - +0.5 305,373 + +0.3
Or see this region's nucleotide sequence