Experiment: copper (II) chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0168 and Sama_0169 are separated by 26 nucleotides Sama_0169 and Sama_0170 are separated by 10 nucleotides
Sama_0168: Sama_0168 - general secretion pathway protein C (RefSeq), at 197,297 to 198,220
_0168
Sama_0169: Sama_0169 - type II and III secretion system protein (RefSeq), at 198,247 to 200,358
_0169
Sama_0170: Sama_0170 - general secretion pathway protein E (RefSeq), at 200,369 to 201,931
_0170
Position (kb) 198
199
200
201 Strain fitness (log2 ratio) -2
-1
0
1 at 197.279 kb on + strand at 197.291 kb on + strand at 197.292 kb on - strand at 197.512 kb on + strand, within Sama_0168 at 197.512 kb on + strand, within Sama_0168 at 197.513 kb on - strand, within Sama_0168 at 197.691 kb on - strand, within Sama_0168 at 197.808 kb on - strand, within Sama_0168 at 197.808 kb on - strand, within Sama_0168 at 197.824 kb on + strand, within Sama_0168 at 197.824 kb on + strand, within Sama_0168 at 197.835 kb on + strand, within Sama_0168 at 197.966 kb on + strand, within Sama_0168 at 197.966 kb on + strand, within Sama_0168 at 197.966 kb on + strand, within Sama_0168 at 197.966 kb on + strand, within Sama_0168 at 197.966 kb on + strand, within Sama_0168 at 198.171 kb on + strand at 198.171 kb on + strand at 198.171 kb on + strand at 198.171 kb on + strand at 198.218 kb on + strand at 198.230 kb on + strand at 198.240 kb on + strand at 198.240 kb on + strand at 198.241 kb on - strand at 198.241 kb on - strand at 198.245 kb on - strand at 198.297 kb on + strand at 198.390 kb on + strand at 198.391 kb on - strand at 198.488 kb on - strand, within Sama_0169 at 198.520 kb on + strand, within Sama_0169 at 198.521 kb on - strand, within Sama_0169 at 198.661 kb on + strand, within Sama_0169 at 198.662 kb on - strand, within Sama_0169 at 198.735 kb on + strand, within Sama_0169 at 198.739 kb on + strand, within Sama_0169 at 198.740 kb on - strand, within Sama_0169 at 198.816 kb on - strand, within Sama_0169 at 198.816 kb on - strand, within Sama_0169 at 198.819 kb on + strand, within Sama_0169 at 198.966 kb on + strand, within Sama_0169 at 198.967 kb on - strand, within Sama_0169 at 198.969 kb on + strand, within Sama_0169 at 199.075 kb on + strand, within Sama_0169 at 199.197 kb on + strand, within Sama_0169 at 199.494 kb on + strand, within Sama_0169 at 199.654 kb on - strand, within Sama_0169 at 199.695 kb on + strand, within Sama_0169 at 199.750 kb on - strand, within Sama_0169 at 199.780 kb on - strand, within Sama_0169 at 200.017 kb on - strand, within Sama_0169 at 200.085 kb on + strand, within Sama_0169 at 200.143 kb on + strand, within Sama_0169 at 200.150 kb on - strand at 200.281 kb on + strand at 200.338 kb on + strand at 200.338 kb on + strand at 200.339 kb on - strand at 200.356 kb on + strand at 200.368 kb on + strand at 200.862 kb on - strand, within Sama_0170 at 200.862 kb on - strand, within Sama_0170 at 200.930 kb on - strand, within Sama_0170 at 201.026 kb on - strand, within Sama_0170 at 201.119 kb on - strand, within Sama_0170 at 201.311 kb on + strand, within Sama_0170 at 201.325 kb on + strand, within Sama_0170 at 201.326 kb on - strand, within Sama_0170 at 201.327 kb on + strand, within Sama_0170 at 201.328 kb on - strand, within Sama_0170
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 0.16 mM remove 197,279 + -0.3 197,291 + -0.2 197,292 - +1.1 197,512 + Sama_0168 0.23 -0.5 197,512 + Sama_0168 0.23 +1.1 197,513 - Sama_0168 0.23 -1.5 197,691 - Sama_0168 0.43 -0.9 197,808 - Sama_0168 0.55 -1.5 197,808 - Sama_0168 0.55 -1.2 197,824 + Sama_0168 0.57 +0.5 197,824 + Sama_0168 0.57 +0.4 197,835 + Sama_0168 0.58 -1.2 197,966 + Sama_0168 0.72 -1.9 197,966 + Sama_0168 0.72 -0.6 197,966 + Sama_0168 0.72 -0.9 197,966 + Sama_0168 0.72 -0.0 197,966 + Sama_0168 0.72 -0.7 198,171 + +0.8 198,171 + +0.4 198,171 + -0.8 198,171 + -0.5 198,218 + -1.3 198,230 + +0.1 198,240 + +0.6 198,240 + -0.5 198,241 - +0.1 198,241 - +0.1 198,245 - -1.7 198,297 + +0.1 198,390 + +1.1 198,391 - -1.9 198,488 - Sama_0169 0.11 +1.1 198,520 + Sama_0169 0.13 -1.2 198,521 - Sama_0169 0.13 -1.2 198,661 + Sama_0169 0.20 +0.7 198,662 - Sama_0169 0.20 -0.9 198,735 + Sama_0169 0.23 -1.9 198,739 + Sama_0169 0.23 +0.1 198,740 - Sama_0169 0.23 -0.7 198,816 - Sama_0169 0.27 -1.9 198,816 - Sama_0169 0.27 -1.7 198,819 + Sama_0169 0.27 -0.5 198,966 + Sama_0169 0.34 -1.5 198,967 - Sama_0169 0.34 -0.5 198,969 + Sama_0169 0.34 -1.5 199,075 + Sama_0169 0.39 -0.5 199,197 + Sama_0169 0.45 -0.9 199,494 + Sama_0169 0.59 -0.5 199,654 - Sama_0169 0.67 +0.1 199,695 + Sama_0169 0.69 +0.7 199,750 - Sama_0169 0.71 +0.1 199,780 - Sama_0169 0.73 -0.5 200,017 - Sama_0169 0.84 +1.1 200,085 + Sama_0169 0.87 +0.1 200,143 + Sama_0169 0.90 -0.9 200,150 - -1.7 200,281 + +0.3 200,338 + +1.1 200,338 + +1.5 200,339 - -0.9 200,356 + -0.5 200,368 + -0.9 200,862 - Sama_0170 0.32 +1.1 200,862 - Sama_0170 0.32 -0.9 200,930 - Sama_0170 0.36 -0.5 201,026 - Sama_0170 0.42 -2.7 201,119 - Sama_0170 0.48 -1.0 201,311 + Sama_0170 0.60 -1.9 201,325 + Sama_0170 0.61 +0.1 201,326 - Sama_0170 0.61 +0.4 201,327 + Sama_0170 0.61 -0.5 201,328 - Sama_0170 0.61 -1.7
Or see this region's nucleotide sequence