Experiment: copper (II) chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0120 and Sama_0121 are separated by 16 nucleotides Sama_0121 and Sama_0122 overlap by 17 nucleotides Sama_0122 and Sama_0123 overlap by 1 nucleotides
Sama_0120: Sama_0120 - molybdopterin biosynthesis MoeA protein, putative (RefSeq), at 133,572 to 135,371
_0120
Sama_0121: Sama_0121 - molybdopterin-guanine dinucleotide biosynthesis protein (RefSeq), at 135,388 to 135,978
_0121
Sama_0122: Sama_0122 - ABC transporter, ATP-binding protein (RefSeq), at 135,962 to 136,654
_0122
Sama_0123: Sama_0123 - ABC transporter, permease protein (RefSeq), at 136,654 to 137,361
_0123
Position (kb) 135
136 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 134.430 kb on - strand, within Sama_0120 at 134.430 kb on - strand, within Sama_0120 at 134.504 kb on + strand, within Sama_0120 at 134.504 kb on + strand, within Sama_0120 at 134.504 kb on + strand, within Sama_0120 at 134.504 kb on + strand, within Sama_0120 at 134.504 kb on + strand, within Sama_0120 at 134.504 kb on + strand, within Sama_0120 at 134.505 kb on - strand, within Sama_0120 at 134.505 kb on - strand, within Sama_0120 at 134.505 kb on - strand, within Sama_0120 at 134.505 kb on - strand, within Sama_0120 at 134.505 kb on - strand, within Sama_0120 at 134.505 kb on - strand, within Sama_0120 at 134.505 kb on - strand, within Sama_0120 at 134.508 kb on + strand, within Sama_0120 at 134.509 kb on - strand, within Sama_0120 at 134.509 kb on - strand, within Sama_0120 at 134.510 kb on - strand, within Sama_0120 at 134.706 kb on + strand, within Sama_0120 at 134.754 kb on - strand, within Sama_0120 at 134.850 kb on - strand, within Sama_0120 at 134.850 kb on - strand, within Sama_0120 at 134.850 kb on - strand, within Sama_0120 at 134.850 kb on - strand, within Sama_0120 at 134.850 kb on - strand, within Sama_0120 at 134.850 kb on - strand, within Sama_0120 at 134.851 kb on + strand, within Sama_0120 at 134.851 kb on + strand, within Sama_0120 at 134.851 kb on + strand, within Sama_0120 at 134.851 kb on + strand, within Sama_0120 at 134.851 kb on + strand, within Sama_0120 at 134.851 kb on + strand, within Sama_0120 at 134.851 kb on + strand, within Sama_0120 at 134.851 kb on + strand, within Sama_0120 at 134.851 kb on + strand, within Sama_0120 at 134.851 kb on + strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.891 kb on + strand, within Sama_0120 at 134.916 kb on + strand, within Sama_0120 at 134.916 kb on + strand, within Sama_0120 at 134.916 kb on + strand, within Sama_0120 at 134.917 kb on - strand, within Sama_0120 at 134.972 kb on + strand, within Sama_0120 at 134.972 kb on + strand, within Sama_0120 at 134.972 kb on + strand, within Sama_0120 at 134.972 kb on + strand, within Sama_0120 at 134.973 kb on - strand, within Sama_0120 at 134.973 kb on - strand, within Sama_0120 at 134.973 kb on - strand, within Sama_0120 at 134.973 kb on - strand, within Sama_0120 at 135.006 kb on + strand, within Sama_0120 at 135.006 kb on + strand, within Sama_0120 at 135.006 kb on + strand, within Sama_0120 at 135.006 kb on + strand, within Sama_0120 at 135.007 kb on - strand, within Sama_0120 at 135.007 kb on - strand, within Sama_0120 at 135.029 kb on + strand, within Sama_0120 at 135.029 kb on + strand, within Sama_0120 at 135.030 kb on - strand, within Sama_0120 at 135.039 kb on + strand, within Sama_0120 at 135.039 kb on + strand, within Sama_0120 at 135.039 kb on + strand, within Sama_0120 at 135.040 kb on - strand, within Sama_0120 at 135.040 kb on - strand, within Sama_0120 at 135.050 kb on + strand, within Sama_0120 at 135.050 kb on + strand, within Sama_0120 at 135.051 kb on - strand, within Sama_0120 at 135.051 kb on - strand, within Sama_0120 at 135.051 kb on - strand, within Sama_0120 at 135.187 kb on + strand, within Sama_0120 at 135.187 kb on + strand, within Sama_0120 at 135.187 kb on + strand, within Sama_0120 at 135.187 kb on + strand, within Sama_0120 at 135.187 kb on + strand, within Sama_0120 at 135.187 kb on + strand, within Sama_0120 at 135.187 kb on + strand, within Sama_0120 at 135.187 kb on + strand, within Sama_0120 at 135.187 kb on + strand, within Sama_0120 at 135.188 kb on - strand, within Sama_0120 at 135.188 kb on - strand, within Sama_0120 at 135.188 kb on - strand, within Sama_0120 at 135.188 kb on - strand, within Sama_0120 at 135.188 kb on - strand, within Sama_0120 at 135.188 kb on - strand, within Sama_0120 at 135.188 kb on - strand, within Sama_0120 at 135.188 kb on - strand, within Sama_0120 at 135.188 kb on - strand, within Sama_0120 at 135.188 kb on - strand, within Sama_0120 at 135.207 kb on - strand at 135.252 kb on + strand at 135.316 kb on + strand at 135.316 kb on + strand at 135.316 kb on + strand at 135.317 kb on - strand at 135.317 kb on - strand at 135.334 kb on - strand at 135.409 kb on + strand at 135.410 kb on - strand at 135.410 kb on - strand at 135.410 kb on - strand at 135.418 kb on + strand at 135.418 kb on + strand at 135.418 kb on + strand at 135.418 kb on + strand at 135.418 kb on + strand at 135.419 kb on - strand at 135.419 kb on - strand at 135.419 kb on - strand at 135.419 kb on - strand at 135.442 kb on + strand at 135.442 kb on + strand at 135.443 kb on - strand at 135.443 kb on - strand at 135.443 kb on - strand at 135.498 kb on - strand, within Sama_0121 at 135.590 kb on + strand, within Sama_0121 at 135.591 kb on - strand, within Sama_0121 at 135.691 kb on + strand, within Sama_0121 at 135.691 kb on + strand, within Sama_0121 at 135.691 kb on + strand, within Sama_0121 at 135.691 kb on + strand, within Sama_0121 at 135.691 kb on + strand, within Sama_0121 at 135.734 kb on - strand, within Sama_0121 at 135.781 kb on + strand, within Sama_0121 at 135.781 kb on + strand, within Sama_0121 at 135.782 kb on - strand, within Sama_0121 at 135.804 kb on - strand, within Sama_0121 at 135.804 kb on - strand, within Sama_0121 at 135.865 kb on - strand, within Sama_0121 at 135.901 kb on + strand, within Sama_0121 at 135.978 kb on + strand at 135.978 kb on + strand at 135.978 kb on + strand at 135.979 kb on - strand at 135.979 kb on - strand at 135.979 kb on - strand at 135.979 kb on - strand at 135.979 kb on - strand at 135.979 kb on - strand at 135.979 kb on - strand at 135.979 kb on - strand at 135.979 kb on - strand at 135.979 kb on - strand at 135.979 kb on - strand at 135.980 kb on + strand at 136.045 kb on + strand, within Sama_0122 at 136.045 kb on + strand, within Sama_0122 at 136.046 kb on - strand, within Sama_0122 at 136.097 kb on + strand, within Sama_0122 at 136.098 kb on - strand, within Sama_0122 at 136.098 kb on - strand, within Sama_0122 at 136.171 kb on + strand, within Sama_0122 at 136.171 kb on + strand, within Sama_0122 at 136.178 kb on + strand, within Sama_0122 at 136.392 kb on + strand, within Sama_0122 at 136.410 kb on + strand, within Sama_0122 at 136.411 kb on - strand, within Sama_0122 at 136.411 kb on - strand, within Sama_0122 at 136.475 kb on + strand, within Sama_0122 at 136.475 kb on + strand, within Sama_0122 at 136.475 kb on + strand, within Sama_0122 at 136.476 kb on - strand, within Sama_0122 at 136.499 kb on + strand, within Sama_0122 at 136.500 kb on - strand, within Sama_0122 at 136.558 kb on - strand, within Sama_0122 at 136.558 kb on - strand, within Sama_0122 at 136.601 kb on + strand at 136.601 kb on + strand at 136.602 kb on - strand at 136.602 kb on - strand at 136.602 kb on - strand at 136.602 kb on - strand at 136.666 kb on + strand at 136.666 kb on + strand at 136.666 kb on + strand at 136.667 kb on - strand at 136.667 kb on - strand at 136.667 kb on - strand at 136.707 kb on + strand at 136.707 kb on + strand at 136.707 kb on + strand at 136.707 kb on + strand at 136.707 kb on + strand at 136.707 kb on + strand at 136.708 kb on - strand at 136.708 kb on - strand at 136.708 kb on - strand at 136.708 kb on - strand at 136.708 kb on - strand at 136.710 kb on + strand at 136.710 kb on + strand at 136.710 kb on + strand at 136.710 kb on + strand at 136.710 kb on + strand at 136.710 kb on + strand at 136.711 kb on - strand at 136.744 kb on + strand, within Sama_0123 at 136.744 kb on + strand, within Sama_0123 at 136.767 kb on + strand, within Sama_0123 at 136.768 kb on - strand, within Sama_0123 at 136.797 kb on + strand, within Sama_0123 at 136.797 kb on + strand, within Sama_0123 at 136.797 kb on + strand, within Sama_0123 at 136.797 kb on + strand, within Sama_0123 at 136.798 kb on - strand, within Sama_0123 at 136.798 kb on - strand, within Sama_0123 at 136.800 kb on + strand, within Sama_0123 at 136.801 kb on - strand, within Sama_0123 at 136.801 kb on - strand, within Sama_0123 at 136.801 kb on - strand, within Sama_0123 at 136.801 kb on - strand, within Sama_0123 at 136.811 kb on + strand, within Sama_0123 at 136.811 kb on + strand, within Sama_0123 at 136.811 kb on + strand, within Sama_0123 at 136.811 kb on + strand, within Sama_0123 at 136.811 kb on + strand, within Sama_0123 at 136.812 kb on - strand, within Sama_0123 at 136.812 kb on - strand, within Sama_0123 at 136.812 kb on - strand, within Sama_0123 at 136.812 kb on - strand, within Sama_0123 at 136.812 kb on - strand, within Sama_0123 at 136.812 kb on - strand, within Sama_0123 at 136.924 kb on + strand, within Sama_0123 at 136.924 kb on + strand, within Sama_0123 at 136.924 kb on + strand, within Sama_0123 at 136.924 kb on + strand, within Sama_0123 at 136.924 kb on + strand, within Sama_0123 at 136.925 kb on - strand, within Sama_0123 at 136.925 kb on - strand, within Sama_0123 at 136.925 kb on - strand, within Sama_0123 at 136.925 kb on - strand, within Sama_0123 at 136.925 kb on - strand, within Sama_0123 at 136.925 kb on - strand, within Sama_0123
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 0.16 mM remove 134,430 - Sama_0120 0.48 -0.0 134,430 - Sama_0120 0.48 -0.1 134,504 + Sama_0120 0.52 -0.9 134,504 + Sama_0120 0.52 -0.0 134,504 + Sama_0120 0.52 +0.9 134,504 + Sama_0120 0.52 +0.1 134,504 + Sama_0120 0.52 +0.7 134,504 + Sama_0120 0.52 -1.1 134,505 - Sama_0120 0.52 +0.1 134,505 - Sama_0120 0.52 +0.7 134,505 - Sama_0120 0.52 +0.0 134,505 - Sama_0120 0.52 -0.6 134,505 - Sama_0120 0.52 -0.4 134,505 - Sama_0120 0.52 +0.1 134,505 - Sama_0120 0.52 +0.5 134,508 + Sama_0120 0.52 -0.0 134,509 - Sama_0120 0.52 +0.8 134,509 - Sama_0120 0.52 -1.1 134,510 - Sama_0120 0.52 -0.2 134,706 + Sama_0120 0.63 -0.9 134,754 - Sama_0120 0.66 +0.4 134,850 - Sama_0120 0.71 -0.6 134,850 - Sama_0120 0.71 +0.4 134,850 - Sama_0120 0.71 -0.7 134,850 - Sama_0120 0.71 -0.5 134,850 - Sama_0120 0.71 +1.1 134,850 - Sama_0120 0.71 -0.4 134,851 + Sama_0120 0.71 +1.1 134,851 + Sama_0120 0.71 +0.4 134,851 + Sama_0120 0.71 -0.4 134,851 + Sama_0120 0.71 +0.1 134,851 + Sama_0120 0.71 +0.0 134,851 + Sama_0120 0.71 -0.4 134,851 + Sama_0120 0.71 +0.2 134,851 + Sama_0120 0.71 +0.9 134,851 + Sama_0120 0.71 +0.8 134,851 + Sama_0120 0.71 +0.4 134,852 - Sama_0120 0.71 +0.5 134,852 - Sama_0120 0.71 -0.4 134,852 - Sama_0120 0.71 +0.9 134,852 - Sama_0120 0.71 +0.6 134,852 - Sama_0120 0.71 +0.2 134,852 - Sama_0120 0.71 +1.4 134,852 - Sama_0120 0.71 -0.2 134,852 - Sama_0120 0.71 -1.0 134,852 - Sama_0120 0.71 -0.8 134,852 - Sama_0120 0.71 -0.0 134,852 - Sama_0120 0.71 +0.3 134,852 - Sama_0120 0.71 +0.0 134,852 - Sama_0120 0.71 -1.0 134,852 - Sama_0120 0.71 +1.1 134,852 - Sama_0120 0.71 -0.1 134,852 - Sama_0120 0.71 +0.8 134,891 + Sama_0120 0.73 +0.3 134,916 + Sama_0120 0.75 +0.2 134,916 + Sama_0120 0.75 -0.3 134,916 + Sama_0120 0.75 +0.1 134,917 - Sama_0120 0.75 +0.0 134,972 + Sama_0120 0.78 +0.6 134,972 + Sama_0120 0.78 -1.4 134,972 + Sama_0120 0.78 -0.3 134,972 + Sama_0120 0.78 +0.4 134,973 - Sama_0120 0.78 +0.1 134,973 - Sama_0120 0.78 +0.4 134,973 - Sama_0120 0.78 -0.9 134,973 - Sama_0120 0.78 -1.1 135,006 + Sama_0120 0.80 -0.1 135,006 + Sama_0120 0.80 +0.4 135,006 + Sama_0120 0.80 +0.3 135,006 + Sama_0120 0.80 -2.0 135,007 - Sama_0120 0.80 -0.7 135,007 - Sama_0120 0.80 -1.7 135,029 + Sama_0120 0.81 -0.1 135,029 + Sama_0120 0.81 +1.1 135,030 - Sama_0120 0.81 +0.2 135,039 + Sama_0120 0.81 -0.2 135,039 + Sama_0120 0.81 +0.7 135,039 + Sama_0120 0.81 +0.0 135,040 - Sama_0120 0.82 -0.1 135,040 - Sama_0120 0.82 +0.9 135,050 + Sama_0120 0.82 +0.8 135,050 + Sama_0120 0.82 -0.0 135,051 - Sama_0120 0.82 +1.0 135,051 - Sama_0120 0.82 -1.2 135,051 - Sama_0120 0.82 +0.1 135,187 + Sama_0120 0.90 +0.5 135,187 + Sama_0120 0.90 +0.4 135,187 + Sama_0120 0.90 +0.2 135,187 + Sama_0120 0.90 -0.3 135,187 + Sama_0120 0.90 -0.4 135,187 + Sama_0120 0.90 +0.2 135,187 + Sama_0120 0.90 -0.1 135,187 + Sama_0120 0.90 -0.1 135,187 + Sama_0120 0.90 +0.7 135,188 - Sama_0120 0.90 -1.4 135,188 - Sama_0120 0.90 +0.0 135,188 - Sama_0120 0.90 +0.4 135,188 - Sama_0120 0.90 -0.0 135,188 - Sama_0120 0.90 -0.2 135,188 - Sama_0120 0.90 -0.3 135,188 - Sama_0120 0.90 +0.1 135,188 - Sama_0120 0.90 +0.3 135,188 - Sama_0120 0.90 +0.7 135,188 - Sama_0120 0.90 -0.3 135,207 - -0.0 135,252 + +0.1 135,316 + -0.4 135,316 + +0.4 135,316 + +0.3 135,317 - -0.4 135,317 - -0.6 135,334 - +0.6 135,409 + -0.2 135,410 - +0.2 135,410 - +0.0 135,410 - -0.6 135,418 + -0.6 135,418 + +1.0 135,418 + +1.1 135,418 + +1.6 135,418 + +0.3 135,419 - +0.1 135,419 - +0.4 135,419 - -0.7 135,419 - +0.7 135,442 + -0.8 135,442 + -0.1 135,443 - -1.2 135,443 - +1.7 135,443 - -0.7 135,498 - Sama_0121 0.19 +0.4 135,590 + Sama_0121 0.34 -0.9 135,591 - Sama_0121 0.34 +1.0 135,691 + Sama_0121 0.51 +0.3 135,691 + Sama_0121 0.51 +0.7 135,691 + Sama_0121 0.51 +0.0 135,691 + Sama_0121 0.51 +1.1 135,691 + Sama_0121 0.51 +1.1 135,734 - Sama_0121 0.59 +0.3 135,781 + Sama_0121 0.66 +0.6 135,781 + Sama_0121 0.66 +0.1 135,782 - Sama_0121 0.67 +1.1 135,804 - Sama_0121 0.70 +2.0 135,804 - Sama_0121 0.70 +1.9 135,865 - Sama_0121 0.81 +1.1 135,901 + Sama_0121 0.87 +0.6 135,978 + +0.3 135,978 + +0.9 135,978 + +0.0 135,979 - -0.1 135,979 - +0.7 135,979 - -0.4 135,979 - +0.0 135,979 - -0.3 135,979 - +0.8 135,979 - -0.9 135,979 - +1.0 135,979 - -0.7 135,979 - +1.6 135,979 - +0.7 135,980 + +0.5 136,045 + Sama_0122 0.12 +1.1 136,045 + Sama_0122 0.12 +2.1 136,046 - Sama_0122 0.12 -1.3 136,097 + Sama_0122 0.19 +0.3 136,098 - Sama_0122 0.20 -1.0 136,098 - Sama_0122 0.20 +0.9 136,171 + Sama_0122 0.30 +0.2 136,171 + Sama_0122 0.30 +0.0 136,178 + Sama_0122 0.31 +0.4 136,392 + Sama_0122 0.62 -0.9 136,410 + Sama_0122 0.65 -0.1 136,411 - Sama_0122 0.65 +1.6 136,411 - Sama_0122 0.65 +2.4 136,475 + Sama_0122 0.74 -0.9 136,475 + Sama_0122 0.74 +0.9 136,475 + Sama_0122 0.74 -0.5 136,476 - Sama_0122 0.74 -0.1 136,499 + Sama_0122 0.77 +0.6 136,500 - Sama_0122 0.78 -0.1 136,558 - Sama_0122 0.86 +1.3 136,558 - Sama_0122 0.86 +1.7 136,601 + -0.7 136,601 + -0.1 136,602 - -0.8 136,602 - +0.4 136,602 - +0.1 136,602 - +0.1 136,666 + -0.4 136,666 + -0.0 136,666 + -0.5 136,667 - +0.6 136,667 - -0.2 136,667 - +0.6 136,707 + -3.7 136,707 + +0.7 136,707 + +0.7 136,707 + -0.3 136,707 + -0.7 136,707 + -0.4 136,708 - +0.8 136,708 - -0.5 136,708 - -0.4 136,708 - -1.0 136,708 - +1.0 136,710 + +0.5 136,710 + +0.0 136,710 + -1.0 136,710 + -1.0 136,710 + -0.7 136,710 + +0.1 136,711 - -0.6 136,744 + Sama_0123 0.13 +0.7 136,744 + Sama_0123 0.13 +0.1 136,767 + Sama_0123 0.16 -0.3 136,768 - Sama_0123 0.16 -0.0 136,797 + Sama_0123 0.20 +0.1 136,797 + Sama_0123 0.20 -0.6 136,797 + Sama_0123 0.20 +0.4 136,797 + Sama_0123 0.20 -0.3 136,798 - Sama_0123 0.20 -0.4 136,798 - Sama_0123 0.20 -1.4 136,800 + Sama_0123 0.21 +0.5 136,801 - Sama_0123 0.21 -1.0 136,801 - Sama_0123 0.21 +0.7 136,801 - Sama_0123 0.21 +0.1 136,801 - Sama_0123 0.21 +0.2 136,811 + Sama_0123 0.22 +0.4 136,811 + Sama_0123 0.22 +0.3 136,811 + Sama_0123 0.22 +0.6 136,811 + Sama_0123 0.22 -0.1 136,811 + Sama_0123 0.22 +0.1 136,812 - Sama_0123 0.22 +0.9 136,812 - Sama_0123 0.22 -0.7 136,812 - Sama_0123 0.22 -2.2 136,812 - Sama_0123 0.22 -0.7 136,812 - Sama_0123 0.22 -1.8 136,812 - Sama_0123 0.22 -0.1 136,924 + Sama_0123 0.38 -0.4 136,924 + Sama_0123 0.38 -0.6 136,924 + Sama_0123 0.38 +0.3 136,924 + Sama_0123 0.38 +0.6 136,924 + Sama_0123 0.38 +0.9 136,925 - Sama_0123 0.38 -1.1 136,925 - Sama_0123 0.38 +0.4 136,925 - Sama_0123 0.38 -0.6 136,925 - Sama_0123 0.38 +0.4 136,925 - Sama_0123 0.38 -0.4 136,925 - Sama_0123 0.38 +0.3
Or see this region's nucleotide sequence