Strain Fitness in Shewanella oneidensis MR-1 around SO1881

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,976,242	+	nlpB	SO1880	0.65	+0.4
1,976,242	+	nlpB	SO1880	0.65	-2.3
1,976,370	+	nlpB	SO1880	0.77	-1.2
1,976,370	+	nlpB	SO1880	0.77	-0.5
1,976,378	-	nlpB	SO1880	0.78	+0.4
1,976,574	+				-0.6
1,976,582	-				+0.5
1,976,582	-				+0.5
1,977,218	-				-0.4
1,977,397	-		SO1881	0.14	-0.0
1,977,398	-		SO1881	0.14	+0.6
1,977,445	-		SO1881	0.19	-0.3
1,977,742	+		SO1881	0.46	+0.4
1,977,789	+		SO1881	0.51	-0.0
1,977,797	-		SO1881	0.51	+0.5
1,978,037	-		SO1881	0.73	-0.2
1,978,181	-		SO1881	0.87	+0.4
1,978,195	+		SO1881	0.88	-0.3
1,978,233	+				+0.2
1,978,387	+				+0.5
1,978,405	-				+0.2
1,978,438	-				-0.5
1,978,501	-				+0.1
1,978,551	+				+0.6
1,978,554	-				-0.2
1,978,571	-				-0.6
1,978,701	-		SO1882	0.12	-0.1
1,978,736	-		SO1882	0.13	-0.6
1,978,755	+		SO1882	0.14	-0.1
1,978,768	+		SO1882	0.14	+0.7
1,978,768	+		SO1882	0.14	-0.3
1,978,768	+		SO1882	0.14	+0.7
1,978,768	+		SO1882	0.14	-0.2
1,978,776	-		SO1882	0.15	+1.0
1,978,776	-		SO1882	0.15	+0.2
1,978,776	-		SO1882	0.15	+0.2
1,978,776	-		SO1882	0.15	+0.4
1,978,909	+		SO1882	0.19	+0.5
1,978,961	+		SO1882	0.21	+1.4
1,978,978	+		SO1882	0.21	-0.4
1,978,978	+		SO1882	0.21	-0.1
1,978,986	-		SO1882	0.22	-0.2
1,978,986	-		SO1882	0.22	+0.4
1,978,986	-		SO1882	0.22	+0.3
1,978,986	-		SO1882	0.22	-0.5
1,979,118	+		SO1882	0.26	-0.9
1,979,126	-		SO1882	0.26	-0.6
1,979,295	-		SO1882	0.31	+0.1